Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y16 entry

There are 2 chains in PDB entry 5Y16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13GLN 160
B
 PRO 16SER 161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5Y16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 43Right-handed alpha
Helix 3
AA3
A
78 80Right-handed 310
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
125 137Right-handed alpha
Helix 7
AA7
A
143 160Right-handed alpha
Helix 8
AA8
B
31 35Right-handed 310
Helix 9
AA9
B
36 44Right-handed alpha
Helix 10
AB1
B
78 80Right-handed 310
Helix 11
AB2
B
81 95Right-handed alpha
Helix 12
AB3
B
108 122Right-handed alpha
Helix 13
AB4
B
125 137Right-handed alpha
Helix 14
AB5
B
143 161Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y16.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
45 50parallel
Strand 5
A
64 67parallel
Strand 6
B
64 67anti-parallel
Strand 7
B
47 50parallel
Strand 8
B
99 102parallel
Strand 9
B
26 29parallel
Strand 10
B
20 23anti-parallel
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