Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y17 entry

There are 2 chains in PDB entry 5Y17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	SER 698
B	SER 21	THR 628

There are117 helices in PDB entry 5Y17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	26	Right-handed alpha
Helix 2	AA2	A	61	73	Right-handed alpha
Helix 3	AA3	A	104	108	Right-handed 310
Helix 4	AA4	A	164	166	Right-handed 310
Helix 5	AA5	A	167	176	Right-handed alpha
Helix 6	AA6	A	190	200	Right-handed alpha
Helix 7	AA7	A	203	212	Right-handed alpha
Helix 8	AA8	A	213	216	Right-handed 310
Helix 9	AA9	A	219	223	Right-handed 310
Helix 10	AB1	A	257	268	Right-handed alpha
Helix 11	AB2	A	270	282	Right-handed alpha
Helix 12	AB3	A	296	300	Right-handed 310
Helix 13	AB4	A	335	340	Right-handed alpha
Helix 14	AB5	A	359	378	Right-handed alpha
Helix 15	AB6	A	381	385	Right-handed 310
Helix 16	AB7	A	452	456	Right-handed 310
Helix 17	AB8	A	459	468	Right-handed alpha
Helix 18	AB9	A	470	486	Right-handed alpha
Helix 19	AC1	A	490	505	Right-handed alpha
Helix 20	AC2	A	505	516	Right-handed alpha
Helix 21	AC3	A	560	576	Right-handed alpha
Helix 22	AC4	A	597	599	Right-handed 310
Helix 23	AC5	A	600	604	Right-handed 310
Helix 24	AC6	A	612	617	Right-handed 310
Helix 25	AC7	A	629	641	Right-handed alpha
Helix 26	AC8	A	652	659	Right-handed alpha
Helix 27	AC9	A	673	688	Right-handed alpha
Helix 28	AD1	A	690	694	Right-handed 310
Helix 29	AD2	B	23	25	Right-handed 310
Helix 30	AD3	B	61	73	Right-handed alpha
Helix 31	AD4	B	104	108	Right-handed 310
Helix 32	AD5	B	164	166	Right-handed 310
Helix 33	AD6	B	167	176	Right-handed alpha
Helix 34	AD7	B	190	200	Right-handed alpha
Helix 35	AD8	B	203	212	Right-handed alpha
Helix 36	AD9	B	213	216	Right-handed 310
Helix 37	AE1	B	219	223	Right-handed 310
Helix 38	AE2	B	257	268	Right-handed alpha
Helix 39	AE3	B	270	282	Right-handed alpha
Helix 40	AE4	B	296	300	Right-handed 310
Helix 41	AE5	B	315	319	Right-handed 310
Helix 42	AE6	B	335	340	Right-handed alpha
Helix 43	AE7	B	359	378	Right-handed alpha
Helix 44	AE8	B	381	385	Right-handed 310
Helix 45	AE9	B	452	456	Right-handed 310
Helix 46	AF1	B	459	468	Right-handed alpha
Helix 47	AF2	B	470	486	Right-handed alpha
Helix 48	AF3	B	490	505	Right-handed alpha
Helix 49	AF4	B	505	516	Right-handed alpha
Helix 50	AF5	B	524	528	Right-handed 310
Helix 51	AF6	B	560	576	Right-handed alpha
Helix 52	AF7	B	597	599	Right-handed 310
Helix 53	AF8	B	600	604	Right-handed 310
Helix 54	AF9	B	612	617	Right-handed 310
Helix 55	AG1	B	629	641	Right-handed alpha
Helix 56	AG2	B	652	657	Right-handed alpha
Helix 57	AG3	B	673	688	Right-handed alpha
Helix 58	AG4	B	690	694	Right-handed 310
Helix 59	AG5	C	23	25	Right-handed 310
Helix 60	AG6	C	61	73	Right-handed alpha
Helix 61	AG7	C	104	108	Right-handed 310
Helix 62	AG8	C	164	166	Right-handed 310
Helix 63	AG9	C	167	176	Right-handed alpha
Helix 64	AH1	C	190	200	Right-handed alpha
Helix 65	AH2	C	203	212	Right-handed alpha
Helix 66	AH3	C	213	216	Right-handed 310
Helix 67	AH4	C	219	223	Right-handed 310
Helix 68	AH5	C	257	268	Right-handed alpha
Helix 69	AH6	C	270	282	Right-handed alpha
Helix 70	AH7	C	296	300	Right-handed 310
Helix 71	AH8	C	315	319	Right-handed 310
Helix 72	AH9	C	335	340	Right-handed alpha
Helix 73	AI1	C	359	378	Right-handed alpha
Helix 74	AI2	C	381	385	Right-handed 310
Helix 75	AI3	C	452	456	Right-handed 310
Helix 76	AI4	C	459	468	Right-handed alpha
Helix 77	AI5	C	470	486	Right-handed alpha
Helix 78	AI6	C	490	505	Right-handed alpha
Helix 79	AI7	C	505	516	Right-handed alpha
Helix 80	AI8	C	524	528	Right-handed 310
Helix 81	AI9	C	560	576	Right-handed alpha
Helix 82	AJ1	C	597	599	Right-handed 310
Helix 83	AJ2	C	600	604	Right-handed 310
Helix 84	AJ3	C	612	617	Right-handed 310
Helix 85	AJ4	C	629	641	Right-handed alpha
Helix 86	AJ5	C	652	659	Right-handed alpha
Helix 87	AJ6	C	673	688	Right-handed alpha
Helix 88	AJ7	C	690	694	Right-handed 310
Helix 89	AJ8	D	23	25	Right-handed 310
Helix 90	AJ9	D	61	73	Right-handed alpha
Helix 91	AK1	D	104	108	Right-handed 310
Helix 92	AK2	D	164	166	Right-handed 310
Helix 93	AK3	D	167	176	Right-handed alpha
Helix 94	AK4	D	190	200	Right-handed alpha
Helix 95	AK5	D	203	212	Right-handed alpha
Helix 96	AK6	D	213	216	Right-handed 310
Helix 97	AK7	D	219	223	Right-handed 310
Helix 98	AK8	D	257	268	Right-handed alpha
Helix 99	AK9	D	270	282	Right-handed alpha
Helix 100	AL1	D	296	300	Right-handed 310
Helix 101	AL2	D	315	319	Right-handed 310
Helix 102	AL3	D	335	340	Right-handed alpha
Helix 103	AL4	D	359	378	Right-handed alpha
Helix 104	AL5	D	381	385	Right-handed 310
Helix 105	AL6	D	452	456	Right-handed 310
Helix 106	AL7	D	459	468	Right-handed alpha
Helix 107	AL8	D	470	486	Right-handed alpha
Helix 108	AL9	D	490	505	Right-handed alpha
Helix 109	AM1	D	505	516	Right-handed alpha
Helix 110	AM2	D	560	576	Right-handed alpha
Helix 111	AM3	D	597	599	Right-handed 310
Helix 112	AM4	D	600	604	Right-handed 310
Helix 113	AM5	D	612	618	Right-handed 310
Helix 114	AM6	D	629	641	Right-handed alpha
Helix 115	AM7	D	652	659	Right-handed alpha
Helix 116	AM8	D	673	688	Right-handed alpha
Helix 117	AM9	D	690	694	Right-handed 310

There are 14 sheets in PDB entry 5Y17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	D	407	408	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	C	442	448	anti-parallel
Strand 3	D	442	448	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	231	234	anti-parallel
Strand 3	A	240	249	anti-parallel
Strand 4	A	287	295	anti-parallel
Strand 5	A	322	331	anti-parallel
Strand 6	A	85	94	anti-parallel
Strand 7	A	113	121	anti-parallel
Strand 8	A	138	145	anti-parallel
Strand 9	A	148	155	anti-parallel
Strand 10	A	225	226	anti-parallel
Strand 11	A	240	249	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	D	27	28	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	A	442	448	anti-parallel
Strand 3	B	442	448	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	580	585	parallel
Strand 3	A	551	555	parallel
Strand 4	A	606	610	parallel
Strand 5	A	645	648	parallel
Strand 6	A	668	671	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	C	407	408	parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	231	234	anti-parallel
Strand 3	B	240	249	anti-parallel
Strand 4	B	287	295	anti-parallel
Strand 5	B	322	331	anti-parallel
Strand 6	B	85	94	anti-parallel
Strand 7	B	113	121	anti-parallel
Strand 8	B	138	145	anti-parallel
Strand 9	B	148	155	anti-parallel
Strand 10	B	225	226	anti-parallel
Strand 11	B	240	249	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	C	27	28	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	580	585	parallel
Strand 3	B	551	555	parallel
Strand 4	B	606	610	parallel
Strand 5	B	645	648	parallel
Strand 6	B	668	671	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	231	234	anti-parallel
Strand 3	C	240	249	anti-parallel
Strand 4	C	287	295	anti-parallel
Strand 5	C	322	331	anti-parallel
Strand 6	C	85	94	anti-parallel
Strand 7	C	113	121	anti-parallel
Strand 8	C	138	145	anti-parallel
Strand 9	C	148	155	anti-parallel
Strand 10	C	225	226	anti-parallel
Strand 11	C	240	249	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	595	first strand
Strand 2	C	580	585	parallel
Strand 3	C	551	555	parallel
Strand 4	C	606	610	parallel
Strand 5	C	645	648	parallel
Strand 6	C	668	671	parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	231	234	anti-parallel
Strand 3	D	240	249	anti-parallel
Strand 4	D	287	295	anti-parallel
Strand 5	D	322	331	anti-parallel
Strand 6	D	85	94	anti-parallel
Strand 7	D	113	121	anti-parallel
Strand 8	D	138	145	anti-parallel
Strand 9	D	148	155	anti-parallel
Strand 10	D	225	226	anti-parallel
Strand 11	D	240	249	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	595	first strand
Strand 2	D	580	585	parallel
Strand 3	D	551	555	parallel
Strand 4	D	606	610	parallel
Strand 5	D	645	648	parallel
Strand 6	D	668	671	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y17

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y17