Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y1J entry

There are 2 chains in PDB entry 5Y1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 244VAL 471
U
 ASN 742LYS 751
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5Y1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 261Right-handed alpha
Helix 2
AA2
A
266 276Right-handed alpha
Helix 3
AA3
A
279 304Right-handed alpha
Helix 4
AA4
A
307 311Right-handed 310
Helix 5
AA5
A
312 338Right-handed alpha
Helix 6
AA6
A
342 353Right-handed alpha
Helix 7
AA7
A
358 374Right-handed alpha
Helix 8
AA8
A
378 391Right-handed alpha
Helix 9
AA9
A
400 423Right-handed alpha
Helix 10
AB1
A
428 442Right-handed alpha
Helix 11
AB2
A
442 457Right-handed alpha
Helix 12
AB3
A
462 469Right-handed alpha
Helix 13
AB4
U
743 751Right-handed alpha
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There are no sheets in PDB entry 5Y1J
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