Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5Y1J entry
There are 2 chains in PDB entry 5Y1J
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLU 244 | VAL 471 |
U
|
ASN 742 | LYS 751 |
Back to top of page
There are 13
helices in PDB entry 5Y1J. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 246 |
261 | Right-handed alpha |
Helix 2 |
AA2 | A
| 266 |
276 | Right-handed alpha |
Helix 3 |
AA3 | A
| 279 |
304 | Right-handed alpha |
Helix 4 |
AA4 | A
| 307 |
311 | Right-handed 310 |
Helix 5 |
AA5 | A
| 312 |
338 | Right-handed alpha |
Helix 6 |
AA6 | A
| 342 |
353 | Right-handed alpha |
Helix 7 |
AA7 | A
| 358 |
374 | Right-handed alpha |
Helix 8 |
AA8 | A
| 378 |
391 | Right-handed alpha |
Helix 9 |
AA9 | A
| 400 |
423 | Right-handed alpha |
Helix 10 |
AB1 | A
| 428 |
442 | Right-handed alpha |
Helix 11 |
AB2 | A
| 442 |
457 | Right-handed alpha |
Helix 12 |
AB3 | A
| 462 |
469 | Right-handed alpha |
Helix 13 |
AB4 | U
| 743 |
751 | Right-handed alpha |
Back to top of page
There are no sheets in PDB entry
5Y1J
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il