Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y2C entry

There are 2 chains in PDB entry 5Y2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2056GLU 2438
B
 GLU 2056GLU 2438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 5Y2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2067 2070Right-handed 310
Helix 2
AA2
A
2078 2082Right-handed 310
Helix 3
AA3
A
2083 2087Right-handed 310
Helix 4
AA4
A
2108 2113Right-handed alpha
Helix 5
AA5
A
2116 2123Right-handed alpha
Helix 6
AA6
A
2124 2128Right-handed 310
Helix 7
AA7
A
2138 2142Right-handed 310
Helix 8
AA8
A
2144 2151Right-handed alpha
Helix 9
AA9
A
2152 2170Right-handed alpha
Helix 10
AB1
A
2184 2188Right-handed 310
Helix 11
AB2
A
2195 2213Right-handed alpha
Helix 12
AB3
A
2225 2233Right-handed alpha
Helix 13
AB4
A
2234 2242Right-handed alpha
Helix 14
AB5
A
2254 2258Right-handed 310
Helix 15
AB6
A
2278 2289Right-handed alpha
Helix 16
AB7
A
2292 2294Right-handed 310
Helix 17
AB8
A
2339 2348Right-handed alpha
Helix 18
AB9
A
2376 2390Right-handed alpha
Helix 19
AC1
A
2399 2403Right-handed 310
Helix 20
AC2
A
2415 2427Right-handed alpha
Helix 21
AC3
B
2067 2071Right-handed 310
Helix 22
AC4
B
2072 2076Right-handed 310
Helix 23
AC5
B
2078 2082Right-handed 310
Helix 24
AC6
B
2083 2087Right-handed 310
Helix 25
AC7
B
2108 2113Right-handed alpha
Helix 26
AC8
B
2116 2123Right-handed alpha
Helix 27
AC9
B
2124 2128Right-handed 310
Helix 28
AD1
B
2138 2142Right-handed 310
Helix 29
AD2
B
2144 2151Right-handed alpha
Helix 30
AD3
B
2152 2170Right-handed alpha
Helix 31
AD4
B
2184 2188Right-handed 310
Helix 32
AD5
B
2195 2213Right-handed alpha
Helix 33
AD6
B
2225 2233Right-handed alpha
Helix 34
AD7
B
2234 2242Right-handed alpha
Helix 35
AD8
B
2254 2258Right-handed 310
Helix 36
AD9
B
2278 2289Right-handed alpha
Helix 37
AE1
B
2292 2294Right-handed 310
Helix 38
AE2
B
2339 2348Right-handed alpha
Helix 39
AE3
B
2376 2391Right-handed alpha
Helix 40
AE4
B
2399 2403Right-handed 310
Helix 41
AE5
B
2415 2427Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5Y2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2104 2106first strand
Strand 2
A
2089 2097anti-parallel
Strand 3
A
2130 2137parallel
Strand 4
A
2174 2179parallel
Strand 5
A
2217 2222parallel
Strand 6
A
2244 2247parallel
Strand 7
A
2296 2301parallel
Strand 8
A
2394 2398parallel
Strand 9
A
2059 2065parallel
Strand 10
A
2089 2097parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2321 2324first strand
Strand 2
A
2303 2309anti-parallel
Strand 3
A
2336 2338anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2321 2324first strand
Strand 2
A
2303 2309anti-parallel
Strand 3
A
2370 2373anti-parallel
Strand 4
A
2364 2367anti-parallel
Strand 5
A
2352 2354anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2104 2106first strand
Strand 2
B
2089 2097anti-parallel
Strand 3
B
2130 2136parallel
Strand 4
B
2174 2178parallel
Strand 5
B
2217 2222parallel
Strand 6
B
2244 2247parallel
Strand 7
B
2296 2301parallel
Strand 8
B
2394 2398parallel
Strand 9
B
2059 2065parallel
Strand 10
B
2089 2097parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2321 2324first strand
Strand 2
B
2303 2309anti-parallel
Strand 3
B
2336 2338anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2321 2324first strand
Strand 2
B
2303 2309anti-parallel
Strand 3
B
2370 2373anti-parallel
Strand 4
B
2364 2367anti-parallel
Strand 5
B
2352 2354anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il