Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y2D entry

There are 6 chains in PDB entry 5Y2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30LYS 367
B
 ALA 1ALA 3
C
 ALA 1ALA 5
D
 ALA 1ALA 10
E
 ALA 1ALA 8
F
 ALA 1ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5Y2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 53Right-handed alpha
Helix 2
AA2
A
114 119Right-handed alpha
Helix 3
AA3
A
255 268Right-handed alpha
Helix 4
AA4
A
335 340Right-handed alpha
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There are 4 sheets in PDB entry 5Y2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
148 153anti-parallel
Strand 5
A
135 143anti-parallel
Strand 6
A
124 126anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 179first strand
Strand 2
A
187 197anti-parallel
Strand 3
A
209 212anti-parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
232 237anti-parallel
Strand 6
A
224 227anti-parallel
Strand 7
A
174 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
325 326anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
359 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il