Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y2G entry

There is 1 chain in PDB entry 5Y2G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5Y2G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 22Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
65 69Right-handed alpha
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
91 99Right-handed alpha
Helix 7
AA7
A
129 132Right-handed 310
Helix 8
AA8
A
133 144Right-handed alpha
Helix 9
AA9
A
154 165Right-handed alpha
Helix 10
AB1
A
186 202Right-handed alpha
Helix 11
AB2
A
210 221Right-handed alpha
Helix 12
AB3
A
229 231Right-handed 310
Helix 13
AB4
A
232 239Right-handed alpha
Helix 14
AB5
A
250 254Right-handed 310
Helix 15
AB6
A
273 284Right-handed alpha
Helix 16
AB7
A
287 296Right-handed alpha
Helix 17
AB8
A
305 310Right-handed alpha
Helix 18
AB9
A
318 328Right-handed alpha
Helix 19
AC1
A
335 354Right-handed alpha
Helix 20
AC2
A
357 371Right-handed alpha
Helix 21
AC3
A
374 397Right-handed alpha
Helix 22
AC4
A
402 420Right-handed alpha
Helix 23
AC5
A
431 454Right-handed alpha
Helix 24
AC6
A
458 478Right-handed alpha
Helix 25
AC7
A
482 501Right-handed alpha
Helix 26
AC8
A
513 535Right-handed alpha
Helix 27
AC9
A
540 560Right-handed alpha
Helix 28
AD1
A
564 579Right-handed alpha
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There are 4 sheets in PDB entry 5Y2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
60 64parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
107 112anti-parallel
Strand 5
A
302 303anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
60 64parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
329 330parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
115 119anti-parallel
Strand 3
A
243 246anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 183anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il