Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y2M entry

There are 5 chains in PDB entry 5Y2M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	GLU 323
D	GLY 328	GLN 499
B	GLY 5	GLU 323
E	GLY 328	GLN 499
C	GLY 5	ALA 299

There are 37 helices in PDB entry 5Y2M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	68	Right-handed alpha
Helix 2	AA2	A	72	76	Right-handed 310
Helix 3	AA3	A	100	112	Right-handed alpha
Helix 4	AA4	A	184	193	Right-handed alpha
Helix 5	AA5	D	364	383	Right-handed alpha
Helix 6	AA6	D	402	454	Right-handed alpha
Helix 7	AA7	D	472	481	Right-handed alpha
Helix 8	AA8	D	485	499	Right-handed alpha
Helix 9	AA9	B	61	68	Right-handed alpha
Helix 10	AB1	B	72	76	Right-handed 310
Helix 11	AB2	B	100	112	Right-handed alpha
Helix 12	AB3	B	184	193	Right-handed alpha
Helix 13	AB4	E	364	383	Right-handed alpha
Helix 14	AB5	E	402	454	Right-handed alpha
Helix 15	AB6	E	472	481	Right-handed alpha
Helix 16	AB7	E	485	499	Right-handed alpha
Helix 17	AB8	C	61	68	Right-handed alpha
Helix 18	AB9	C	72	76	Right-handed 310
Helix 19	AC1	C	100	112	Right-handed alpha
Helix 20	AC2	C	184	193	Right-handed alpha
Helix 21	AC3	F	364	383	Right-handed alpha
Helix 22	AC4	F	402	454	Right-handed alpha
Helix 23	AC5	F	472	481	Right-handed alpha
Helix 24	AC6	F	485	499	Right-handed alpha
Helix 25	AC7	I	47	51	Right-handed 310
Helix 26	AC8	I	93	95	Right-handed 310
Helix 27	AC9	I	106	110	Right-handed 310
Helix 28	AD1	I	190	192	Right-handed 310
Helix 29	AD2	I	235	238	Right-handed 310
Helix 30	AD3	J	143	148	Right-handed alpha
Helix 31	AD4	J	205	209	Right-handed alpha
Helix 32	AD5	K	47	51	Right-handed 310
Helix 33	AD6	K	106	110	Right-handed 310
Helix 34	AD7	K	190	192	Right-handed 310
Helix 35	AD8	K	235	238	Right-handed 310
Helix 36	AD9	L	143	148	Right-handed alpha
Helix 37	AE1	L	205	209	Right-handed alpha

There are 53 sheets in PDB entry 5Y2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	363	first strand
Strand 2	D	349	354	anti-parallel
Strand 3	A	8	13	anti-parallel
Strand 4	D	464	467	anti-parallel
Strand 5	D	457	459	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	30	32	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	313	315	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	292	293	parallel
Strand 3	A	305	306	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	276	277	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	82	85	parallel
Strand 3	A	264	267	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	226	234	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	253	256	anti-parallel
Strand 5	A	116	118	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	226	234	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	147	149	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	140	142	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	198	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	279	281	anti-parallel
Strand 3	A	299	302	anti-parallel
Strand 4	D	388	389	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	363	first strand
Strand 2	E	349	354	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	E	464	467	anti-parallel
Strand 5	E	457	459	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	30	32	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	313	315	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	292	293	parallel
Strand 3	B	305	306	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	276	277	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	82	85	parallel
Strand 3	B	264	267	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	226	234	parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	253	257	anti-parallel
Strand 5	B	116	118	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	226	234	parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	248	251	anti-parallel
Strand 5	B	147	149	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	137	first strand
Strand 2	B	140	142	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	238	246	anti-parallel
Strand 3	B	198	202	anti-parallel
Strand 4	B	207	210	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	279	281	anti-parallel
Strand 3	B	299	302	anti-parallel
Strand 4	E	388	389	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	359	363	first strand
Strand 2	F	349	354	anti-parallel
Strand 3	C	8	13	anti-parallel
Strand 4	F	464	467	anti-parallel
Strand 5	F	457	459	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	30	32	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	313	315	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	292	293	parallel
Strand 3	C	305	306	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	276	277	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	82	85	parallel
Strand 3	C	264	267	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	226	234	parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	253	257	anti-parallel
Strand 5	C	116	118	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	226	234	parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	248	251	anti-parallel
Strand 5	C	147	149	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	137	first strand
Strand 2	C	140	142	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	239	246	anti-parallel
Strand 3	C	198	202	anti-parallel
Strand 4	C	207	210	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	279	281	anti-parallel
Strand 3	C	299	302	anti-parallel
Strand 4	F	388	389	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	26	first strand
Strand 2	I	37	44	anti-parallel
Strand 3	I	97	102	anti-parallel
Strand 4	I	87	92	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	29	31	first strand
Strand 2	I	141	145	parallel
Strand 3	I	111	118	anti-parallel
Strand 4	I	52	58	anti-parallel
Strand 5	I	64	70	anti-parallel
Strand 6	I	77	79	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	171	179	anti-parallel
Strand 3	I	210	217	anti-parallel
Strand 4	I	197	199	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	171	179	anti-parallel
Strand 3	I	210	217	anti-parallel
Strand 4	I	203	204	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	188	first strand
Strand 2	I	228	234	anti-parallel
Strand 3	I	239	245	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	29	first strand
Strand 2	J	41	47	anti-parallel
Strand 3	J	93	98	anti-parallel
Strand 4	J	85	90	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	35	first strand
Strand 2	J	124	128	parallel
Strand 3	J	108	113	anti-parallel
Strand 4	J	56	61	anti-parallel
Strand 5	J	68	72	anti-parallel
Strand 6	J	76	77	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	35	first strand
Strand 2	J	124	128	parallel
Strand 3	J	108	113	anti-parallel
Strand 4	J	119	120	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	140	first strand
Strand 2	J	151	161	anti-parallel
Strand 3	J	195	204	anti-parallel
Strand 4	J	181	185	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	175	176	first strand
Strand 2	J	167	172	anti-parallel
Strand 3	J	214	219	anti-parallel
Strand 4	J	227	231	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	26	first strand
Strand 2	K	37	44	anti-parallel
Strand 3	K	97	102	anti-parallel
Strand 4	K	87	92	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	31	first strand
Strand 2	K	141	145	parallel
Strand 3	K	111	118	anti-parallel
Strand 4	K	52	58	anti-parallel
Strand 5	K	64	70	anti-parallel
Strand 6	K	77	79	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	158	first strand
Strand 2	K	171	179	anti-parallel
Strand 3	K	210	217	anti-parallel
Strand 4	K	197	199	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	158	first strand
Strand 2	K	171	179	anti-parallel
Strand 3	K	210	217	anti-parallel
Strand 4	K	203	204	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	185	188	first strand
Strand 2	K	228	234	anti-parallel
Strand 3	K	239	245	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	29	first strand
Strand 2	L	41	47	anti-parallel
Strand 3	L	93	98	anti-parallel
Strand 4	L	85	90	anti-parallel

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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	35	first strand
Strand 2	L	124	128	parallel
Strand 3	L	108	113	anti-parallel
Strand 4	L	56	61	anti-parallel
Strand 5	L	68	72	anti-parallel
Strand 6	L	76	77	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	35	first strand
Strand 2	L	124	128	parallel
Strand 3	L	108	113	anti-parallel
Strand 4	L	119	120	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	176	first strand
Strand 2	L	167	172	anti-parallel
Strand 3	L	214	219	anti-parallel
Strand 4	L	227	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y2M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2M