Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y2V entry

There are 4 chains in PDB entry 5Y2V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	ALA 302
B	HIS -1	PHE 301
C	HIS 0	PRO 298
D	HIS 0	PHE 301

There are 48 helices in PDB entry 5Y2V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	18	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	30	46	Right-handed alpha
Helix 4	AA4	A	60	89	Right-handed alpha
Helix 5	AA5	A	102	105	Right-handed 310
Helix 6	AA6	A	106	118	Right-handed alpha
Helix 7	AA7	A	129	139	Right-handed alpha
Helix 8	AA8	A	183	188	Right-handed 310
Helix 9	AA9	A	199	212	Right-handed alpha
Helix 10	AB1	A	224	234	Right-handed alpha
Helix 11	AB2	A	244	247	Right-handed 310
Helix 12	AB3	A	280	295	Right-handed alpha
Helix 13	AB4	B	4	18	Right-handed alpha
Helix 14	AB5	B	19	27	Right-handed alpha
Helix 15	AB6	B	30	46	Right-handed alpha
Helix 16	AB7	B	60	89	Right-handed alpha
Helix 17	AB8	B	102	105	Right-handed 310
Helix 18	AB9	B	106	118	Right-handed alpha
Helix 19	AC1	B	129	139	Right-handed alpha
Helix 20	AC2	B	183	188	Right-handed 310
Helix 21	AC3	B	199	211	Right-handed alpha
Helix 22	AC4	B	224	234	Right-handed alpha
Helix 23	AC5	B	244	249	Right-handed 310
Helix 24	AC6	B	280	296	Right-handed alpha
Helix 25	AC7	C	4	17	Right-handed alpha
Helix 26	AC8	C	19	27	Right-handed alpha
Helix 27	AC9	C	30	46	Right-handed alpha
Helix 28	AD1	C	60	89	Right-handed alpha
Helix 29	AD2	C	102	105	Right-handed 310
Helix 30	AD3	C	106	117	Right-handed alpha
Helix 31	AD4	C	129	139	Right-handed alpha
Helix 32	AD5	C	183	188	Right-handed 310
Helix 33	AD6	C	199	212	Right-handed alpha
Helix 34	AD7	C	224	234	Right-handed alpha
Helix 35	AD8	C	244	247	Right-handed 310
Helix 36	AD9	C	280	294	Right-handed alpha
Helix 37	AE1	D	4	18	Right-handed alpha
Helix 38	AE2	D	19	27	Right-handed alpha
Helix 39	AE3	D	30	46	Right-handed alpha
Helix 40	AE4	D	60	89	Right-handed alpha
Helix 41	AE5	D	102	105	Right-handed 310
Helix 42	AE6	D	106	118	Right-handed alpha
Helix 43	AE7	D	129	139	Right-handed alpha
Helix 44	AE8	D	183	188	Right-handed 310
Helix 45	AE9	D	199	212	Right-handed alpha
Helix 46	AF1	D	224	234	Right-handed alpha
Helix 47	AF2	D	244	247	Right-handed 310
Helix 48	AF3	D	280	296	Right-handed alpha

There are 14 sheets in PDB entry 5Y2V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	53	first strand
Strand 2	A	56	59	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	128	first strand
Strand 2	A	93	100	parallel
Strand 3	A	144	147	parallel
Strand 4	A	265	274	anti-parallel
Strand 5	A	156	171	anti-parallel
Strand 6	A	238	242	anti-parallel
Strand 7	A	191	195	parallel
Strand 8	A	217	222	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	128	first strand
Strand 2	A	93	100	parallel
Strand 3	A	144	147	parallel
Strand 4	A	265	274	anti-parallel
Strand 5	A	156	171	anti-parallel
Strand 6	A	255	257	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	56	59	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	128	first strand
Strand 2	B	93	100	parallel
Strand 3	B	144	147	parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	156	163	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	221	first strand
Strand 2	B	191	194	parallel
Strand 3	B	238	242	parallel
Strand 4	B	166	171	anti-parallel
Strand 5	B	255	258	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	56	59	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	128	first strand
Strand 2	C	94	100	parallel
Strand 3	C	144	147	parallel
Strand 4	C	265	274	anti-parallel
Strand 5	C	156	171	anti-parallel
Strand 6	C	239	242	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	128	first strand
Strand 2	C	94	100	parallel
Strand 3	C	144	147	parallel
Strand 4	C	265	274	anti-parallel
Strand 5	C	156	171	anti-parallel
Strand 6	C	255	257	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	195	first strand
Strand 2	C	217	222	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	56	59	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	128	first strand
Strand 2	D	94	100	parallel
Strand 3	D	144	147	parallel
Strand 4	D	268	274	anti-parallel
Strand 5	D	156	163	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	242	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	255	258	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	194	first strand
Strand 2	D	217	221	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y2V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2V