Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y2Y entry

There are 2 chains in PDB entry 5Y2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 293
B
 ILE 4ILE 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5Y2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed 310
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
80 95Right-handed alpha
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
142 153Right-handed alpha
Helix 7
AA7
A
156 163Right-handed alpha
Helix 8
AA8
A
166 171Right-handed alpha
Helix 9
AA9
A
171 176Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
195 198Right-handed 310
Helix 13
AB4
A
199 209Right-handed alpha
Helix 14
AB5
A
215 232Right-handed alpha
Helix 15
AB6
A
248 259Right-handed alpha
Helix 16
AB7
A
273 278Right-handed alpha
Helix 17
AB8
A
278 291Right-handed alpha
Helix 18
AB9
B
44 49Right-handed 310
Helix 19
AC1
B
51 56Right-handed alpha
Helix 20
AC2
B
80 95Right-handed alpha
Helix 21
AC3
B
107 119Right-handed alpha
Helix 22
AC4
B
137 141Right-handed 310
Helix 23
AC5
B
142 153Right-handed alpha
Helix 24
AC6
B
156 163Right-handed alpha
Helix 25
AC7
B
166 171Right-handed alpha
Helix 26
AC8
B
172 177Right-handed 310
Helix 27
AC9
B
182 191Right-handed alpha
Helix 28
AD1
B
192 194Right-handed 310
Helix 29
AD2
B
195 198Right-handed 310
Helix 30
AD3
B
199 209Right-handed alpha
Helix 31
AD4
B
215 232Right-handed alpha
Helix 32
AD5
B
248 259Right-handed alpha
Helix 33
AD6
B
273 278Right-handed alpha
Helix 34
AD7
B
278 291Right-handed alpha
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There are 2 sheets in PDB entry 5Y2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
35 38parallel
Strand 5
A
100 105parallel
Strand 6
A
123 129parallel
Strand 7
A
236 243parallel
Strand 8
A
262 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
35 38parallel
Strand 5
B
100 106parallel
Strand 6
B
123 131parallel
Strand 7
B
236 243parallel
Strand 8
B
262 270parallel
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