Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y33 entry

There is 1 chain in PDB entry 5Y33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1HIS 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5Y33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 40Right-handed 310
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
128 135Right-handed alpha
Helix 4
AA4
A
168 173Right-handed alpha
Helix 5
AA5
A
174 176Right-handed 310
Helix 6
AA6
A
221 227Right-handed alpha
Helix 7
AA7
A
228 230Right-handed 310
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There are 4 sheets in PDB entry 5Y33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
249 259parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
47 50anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
249 259parallel
Strand 3
A
96 107anti-parallel
Strand 4
A
196 203anti-parallel
Strand 5
A
206 211anti-parallel
Strand 6
A
215 219anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
A
11 19anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
231 240anti-parallel
Strand 5
A
118 126anti-parallel
Strand 6
A
146 151anti-parallel
Strand 7
A
154 162anti-parallel
Strand 8
A
178 180anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
A
11 19anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
231 240anti-parallel
Strand 5
A
118 126anti-parallel
Strand 6
A
146 151anti-parallel
Strand 7
A
154 162anti-parallel
Strand 8
A
184 185anti-parallel
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