Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y37

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y37 entry

There are 4 chains in PDB entry 5Y37 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	LYS 340
B	SER 2	LYS 340
C	MET 5	ALA 339
D	GLY 1	LYS 340

There are 56 helices in PDB entry 5Y37. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	26	Right-handed alpha
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	83	87	Right-handed 310
Helix 4	AA4	A	88	93	Right-handed 310
Helix 5	AA5	A	106	111	Right-handed alpha
Helix 6	AA6	A	112	114	Right-handed 310
Helix 7	AA7	A	140	144	Right-handed 310
Helix 8	AA8	A	155	172	Right-handed alpha
Helix 9	AA9	A	221	225	Right-handed 310
Helix 10	AB1	A	226	230	Right-handed 310
Helix 11	AB2	A	259	270	Right-handed alpha
Helix 12	AB3	A	283	288	Right-handed 310
Helix 13	AB4	A	299	301	Right-handed 310
Helix 14	AB5	A	321	339	Right-handed alpha
Helix 15	AB6	B	15	26	Right-handed alpha
Helix 16	AB7	B	41	51	Right-handed alpha
Helix 17	AB8	B	83	87	Right-handed 310
Helix 18	AB9	B	88	93	Right-handed 310
Helix 19	AC1	B	106	111	Right-handed alpha
Helix 20	AC2	B	112	114	Right-handed 310
Helix 21	AC3	B	140	144	Right-handed 310
Helix 22	AC4	B	155	172	Right-handed alpha
Helix 23	AC5	B	221	225	Right-handed 310
Helix 24	AC6	B	226	230	Right-handed 310
Helix 25	AC7	B	259	270	Right-handed alpha
Helix 26	AC8	B	283	288	Right-handed 310
Helix 27	AC9	B	299	301	Right-handed 310
Helix 28	AD1	B	321	339	Right-handed alpha
Helix 29	AD2	C	15	26	Right-handed alpha
Helix 30	AD3	C	41	51	Right-handed alpha
Helix 31	AD4	C	83	87	Right-handed 310
Helix 32	AD5	C	88	93	Right-handed 310
Helix 33	AD6	C	106	111	Right-handed alpha
Helix 34	AD7	C	112	114	Right-handed 310
Helix 35	AD8	C	140	144	Right-handed 310
Helix 36	AD9	C	155	172	Right-handed alpha
Helix 37	AE1	C	221	225	Right-handed 310
Helix 38	AE2	C	226	230	Right-handed 310
Helix 39	AE3	C	259	270	Right-handed alpha
Helix 40	AE4	C	283	288	Right-handed 310
Helix 41	AE5	C	299	301	Right-handed 310
Helix 42	AE6	C	321	339	Right-handed alpha
Helix 43	AE7	D	15	26	Right-handed alpha
Helix 44	AE8	D	41	51	Right-handed alpha
Helix 45	AE9	D	83	87	Right-handed 310
Helix 46	AF1	D	88	93	Right-handed 310
Helix 47	AF2	D	106	111	Right-handed alpha
Helix 48	AF3	D	112	114	Right-handed 310
Helix 49	AF4	D	140	144	Right-handed 310
Helix 50	AF5	D	155	172	Right-handed alpha
Helix 51	AF6	D	221	225	Right-handed 310
Helix 52	AF7	D	226	230	Right-handed 310
Helix 53	AF8	D	259	270	Right-handed alpha
Helix 54	AF9	D	283	288	Right-handed 310
Helix 55	AG1	D	299	301	Right-handed 310
Helix 56	AG2	D	321	340	Right-handed alpha

There are 12 sheets in PDB entry 5Y37. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	68	71	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	31	37	parallel
Strand 5	A	7	12	parallel
Strand 6	A	96	99	parallel
Strand 7	A	121	124	parallel
Strand 8	A	150	152	parallel
Strand 9	A	133	134	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	215	first strand
Strand 2	A	233	240	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	246	254	anti-parallel
Strand 5	A	309	318	anti-parallel
Strand 6	A	294	297	anti-parallel
Strand 7	A	275	278	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	215	first strand
Strand 2	A	233	240	anti-parallel
Strand 3	A	174	184	parallel
Strand 4	A	246	254	anti-parallel
Strand 5	A	309	318	anti-parallel
Strand 6	A	302	306	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	68	71	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	31	37	parallel
Strand 5	B	7	12	parallel
Strand 6	B	96	99	parallel
Strand 7	B	121	124	parallel
Strand 8	B	150	152	parallel
Strand 9	B	133	134	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	233	240	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	246	254	anti-parallel
Strand 5	B	309	318	anti-parallel
Strand 6	B	294	297	anti-parallel
Strand 7	B	275	278	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	214	first strand
Strand 2	B	233	240	anti-parallel
Strand 3	B	174	184	parallel
Strand 4	B	246	254	anti-parallel
Strand 5	B	309	318	anti-parallel
Strand 6	B	302	306	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	68	71	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	31	37	parallel
Strand 5	C	7	12	parallel
Strand 6	C	96	99	parallel
Strand 7	C	121	124	parallel
Strand 8	C	150	152	parallel
Strand 9	C	133	134	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	233	240	anti-parallel
Strand 3	C	174	184	parallel
Strand 4	C	246	254	anti-parallel
Strand 5	C	309	318	anti-parallel
Strand 6	C	294	297	anti-parallel
Strand 7	C	275	278	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	214	first strand
Strand 2	C	233	240	anti-parallel
Strand 3	C	174	184	parallel
Strand 4	C	246	254	anti-parallel
Strand 5	C	309	318	anti-parallel
Strand 6	C	302	306	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	68	71	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	31	37	parallel
Strand 5	D	7	12	parallel
Strand 6	D	96	99	parallel
Strand 7	D	121	124	parallel
Strand 8	D	150	152	parallel
Strand 9	D	133	134	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	215	first strand
Strand 2	D	233	240	anti-parallel
Strand 3	D	174	184	parallel
Strand 4	D	246	254	anti-parallel
Strand 5	D	309	318	anti-parallel
Strand 6	D	294	297	anti-parallel
Strand 7	D	275	278	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	215	first strand
Strand 2	D	233	240	anti-parallel
Strand 3	D	174	184	parallel
Strand 4	D	246	254	anti-parallel
Strand 5	D	309	318	anti-parallel
Strand 6	D	302	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y37

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y37