Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y38 entry

There are 2 chains in PDB entry 5Y38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 89ALA 172
B
 ASP 14ASN 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5Y38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 96Right-handed alpha
Helix 2
AA2
A
120 122Right-handed 310
Helix 3
AA3
A
123 136Right-handed alpha
Helix 4
AA4
B
36 52Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y38.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
100 106anti-parallel
Strand 3
A
164 170anti-parallel
Strand 4
A
155 161anti-parallel
Strand 5
A
146 150anti-parallel
Strand 6
B
65 69anti-parallel
Strand 7
B
73 80anti-parallel
Strand 8
B
83 90anti-parallel
Strand 9
B
15 22anti-parallel
Strand 10
B
25 31anti-parallel
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