Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y3L entry

There are 4 chains in PDB entry 5Y3L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 28	ARG 807
C	A 1	T 10
E	C 1	C 6
B	THR 28	HIS 537

There are 48 helices in PDB entry 5Y3L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	159	164	Right-handed 310
Helix 4	AA4	A	236	241	Right-handed 310
Helix 5	AA5	A	257	261	Right-handed 310
Helix 6	AA6	A	300	305	Right-handed 310
Helix 7	AA7	A	322	327	Right-handed alpha
Helix 8	AA8	A	357	363	Right-handed 310
Helix 9	AA9	A	380	385	Right-handed alpha
Helix 10	AB1	A	386	390	Right-handed 310
Helix 11	AB2	A	408	412	Right-handed 310
Helix 12	AB3	A	488	493	Right-handed 310
Helix 13	AB4	A	556	561	Right-handed 310
Helix 14	AB5	A	568	574	Right-handed 310
Helix 15	AB6	A	609	615	Right-handed alpha
Helix 16	AB7	A	644	650	Right-handed alpha
Helix 17	AB8	A	669	676	Right-handed 310
Helix 18	AB9	A	741	746	Right-handed 310
Helix 19	AC1	A	748	752	Right-handed 310
Helix 20	AC2	A	768	777	Right-handed alpha
Helix 21	AC3	A	778	781	Right-handed 310
Helix 22	AC4	A	783	788	Right-handed alpha
Helix 23	AC5	A	793	797	Right-handed 310
Helix 24	AC6	A	800	804	Right-handed 310
Helix 25	AC7	B	61	65	Right-handed 310
Helix 26	AC8	B	100	104	Right-handed 310
Helix 27	AC9	B	159	164	Right-handed 310
Helix 28	AD1	B	236	241	Right-handed 310
Helix 29	AD2	B	257	261	Right-handed 310
Helix 30	AD3	B	300	305	Right-handed 310
Helix 31	AD4	B	322	327	Right-handed alpha
Helix 32	AD5	B	357	363	Right-handed 310
Helix 33	AD6	B	380	385	Right-handed alpha
Helix 34	AD7	B	386	390	Right-handed 310
Helix 35	AD8	B	408	412	Right-handed 310
Helix 36	AD9	B	488	493	Right-handed 310
Helix 37	AE1	B	556	561	Right-handed 310
Helix 38	AE2	B	568	574	Right-handed 310
Helix 39	AE3	B	609	615	Right-handed alpha
Helix 40	AE4	B	644	650	Right-handed alpha
Helix 41	AE5	B	669	676	Right-handed 310
Helix 42	AE6	B	741	746	Right-handed 310
Helix 43	AE7	B	748	752	Right-handed 310
Helix 44	AE8	B	768	777	Right-handed alpha
Helix 45	AE9	B	778	781	Right-handed 310
Helix 46	AF1	B	783	788	Right-handed alpha
Helix 47	AF2	B	793	797	Right-handed 310
Helix 48	AF3	B	800	804	Right-handed 310

There are 13 sheets in PDB entry 5Y3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	42	44	anti-parallel
Strand 3	A	67	69	parallel
Strand 4	A	91	93	parallel
Strand 5	A	127	129	parallel
Strand 6	A	147	149	parallel
Strand 7	A	171	173	parallel
Strand 8	A	203	205	parallel
Strand 9	A	224	226	parallel
Strand 10	A	248	250	parallel
Strand 11	A	288	290	parallel
Strand 12	A	312	314	parallel
Strand 13	A	338	340	parallel
Strand 14	A	368	370	parallel
Strand 15	A	395	397	parallel
Strand 16	A	419	421	parallel
Strand 17	A	476	478	parallel
Strand 18	A	500	502	parallel
Strand 19	A	525	527	parallel
Strand 20	A	549	551	parallel
Strand 21	A	579	581	parallel
Strand 22	A	602	604	parallel
Strand 23	A	632	634	parallel
Strand 24	A	657	659	parallel
Strand 25	A	681	683	parallel
Strand 26	A	705	707	parallel
Strand 27	A	729	731	parallel
Strand 28	A	754	756	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	113	114	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	189	190	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	274	275	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	405	406	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	763	first strand
Strand 2	A	790	792	parallel

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There are 28 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	67	69	parallel
Strand 4	B	91	93	parallel
Strand 5	B	127	129	parallel
Strand 6	B	147	149	parallel
Strand 7	B	171	173	parallel
Strand 8	B	203	205	parallel
Strand 9	B	224	226	parallel
Strand 10	B	248	250	parallel
Strand 11	B	288	290	parallel
Strand 12	B	312	314	parallel
Strand 13	B	338	340	parallel
Strand 14	B	368	370	parallel
Strand 15	B	395	397	parallel
Strand 16	B	419	421	parallel
Strand 17	B	476	478	parallel
Strand 18	B	500	502	parallel
Strand 19	B	525	527	parallel
Strand 20	B	549	551	parallel
Strand 21	B	579	581	parallel
Strand 22	B	602	604	parallel
Strand 23	B	632	634	parallel
Strand 24	B	657	659	parallel
Strand 25	B	681	683	parallel
Strand 26	B	705	707	parallel
Strand 27	B	729	731	parallel
Strand 28	B	754	756	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	113	114	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	189	190	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	274	275	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	379	first strand
Strand 2	B	405	406	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	692	first strand
Strand 2	B	715	716	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	763	first strand
Strand 2	B	790	792	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y3L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3L