Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y3M entry

There are 6 chains in PDB entry 5Y3M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 28	THR 801
E	T 1	T 4
F	T 1	T 5
D	G 2	T 7
C	G 2	T 7
B	LEU 28	GLU 541

There are 38 helices in PDB entry 5Y3M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	64	Right-handed 310
Helix 2	AA2	A	158	163	Right-handed 310
Helix 3	AA3	A	235	240	Right-handed 310
Helix 4	AA4	A	299	304	Right-handed 310
Helix 5	AA5	A	321	326	Right-handed alpha
Helix 6	AA6	A	327	332	Right-handed 310
Helix 7	AA7	A	356	360	Right-handed 310
Helix 8	AA8	A	383	387	Right-handed 310
Helix 9	AA9	A	407	413	Right-handed 310
Helix 10	AB1	A	486	491	Right-handed 310
Helix 11	AB2	A	554	559	Right-handed 310
Helix 12	AB3	A	566	572	Right-handed 310
Helix 13	AB4	A	607	613	Right-handed alpha
Helix 14	AB5	A	642	648	Right-handed alpha
Helix 15	AB6	A	667	674	Right-handed 310
Helix 16	AB7	A	739	744	Right-handed 310
Helix 17	AB8	A	745	750	Right-handed alpha
Helix 18	AB9	A	767	775	Right-handed alpha
Helix 19	AC1	A	776	779	Right-handed 310
Helix 20	AC2	B	60	64	Right-handed 310
Helix 21	AC3	B	158	163	Right-handed 310
Helix 22	AC4	B	235	240	Right-handed 310
Helix 23	AC5	B	299	304	Right-handed 310
Helix 24	AC6	B	321	326	Right-handed alpha
Helix 25	AC7	B	327	332	Right-handed 310
Helix 26	AC8	B	356	362	Right-handed 310
Helix 27	AC9	B	383	387	Right-handed 310
Helix 28	AD1	B	407	413	Right-handed 310
Helix 29	AD2	B	486	491	Right-handed 310
Helix 30	AD3	B	555	559	Right-handed 310
Helix 31	AD4	B	566	572	Right-handed 310
Helix 32	AD5	B	607	613	Right-handed alpha
Helix 33	AD6	B	642	648	Right-handed alpha
Helix 34	AD7	B	667	674	Right-handed 310
Helix 35	AD8	B	739	744	Right-handed 310
Helix 36	AD9	B	745	750	Right-handed alpha
Helix 37	AE1	B	768	775	Right-handed alpha
Helix 38	AE2	B	776	779	Right-handed 310

There are 16 sheets in PDB entry 5Y3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 28 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	41	43	anti-parallel
Strand 3	A	66	68	parallel
Strand 4	A	90	92	parallel
Strand 5	A	126	128	parallel
Strand 6	A	146	148	parallel
Strand 7	A	170	172	parallel
Strand 8	A	202	204	parallel
Strand 9	A	223	225	parallel
Strand 10	A	247	249	parallel
Strand 11	A	287	289	parallel
Strand 12	A	311	313	parallel
Strand 13	A	337	339	parallel
Strand 14	A	367	369	parallel
Strand 15	A	394	396	parallel
Strand 16	A	418	420	parallel
Strand 17	A	474	476	parallel
Strand 18	A	498	500	parallel
Strand 19	A	523	525	parallel
Strand 20	A	547	549	parallel
Strand 21	A	577	579	parallel
Strand 22	A	600	602	parallel
Strand 23	A	630	632	parallel
Strand 24	A	655	657	parallel
Strand 25	A	679	681	parallel
Strand 26	A	703	705	parallel
Strand 27	A	727	729	parallel
Strand 28	A	752	754	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	112	113	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	188	189	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	273	274	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	404	405	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	595	first strand
Strand 2	A	624	625	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	690	first strand
Strand 2	A	713	714	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	760	761	first strand
Strand 2	A	788	790	parallel

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There are 28 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	41	43	anti-parallel
Strand 3	B	66	68	parallel
Strand 4	B	90	92	parallel
Strand 5	B	126	128	parallel
Strand 6	B	146	148	parallel
Strand 7	B	170	172	parallel
Strand 8	B	202	204	parallel
Strand 9	B	223	225	parallel
Strand 10	B	247	249	parallel
Strand 11	B	287	289	parallel
Strand 12	B	311	313	parallel
Strand 13	B	337	339	parallel
Strand 14	B	367	369	parallel
Strand 15	B	394	396	parallel
Strand 16	B	418	420	parallel
Strand 17	B	474	476	parallel
Strand 18	B	498	500	parallel
Strand 19	B	523	525	parallel
Strand 20	B	547	549	parallel
Strand 21	B	577	579	parallel
Strand 22	B	600	602	parallel
Strand 23	B	630	632	parallel
Strand 24	B	655	657	parallel
Strand 25	B	679	681	parallel
Strand 26	B	703	705	parallel
Strand 27	B	727	729	parallel
Strand 28	B	752	754	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	112	113	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	188	189	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	273	274	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	404	405	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	595	first strand
Strand 2	B	624	625	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	690	first strand
Strand 2	B	713	714	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	760	761	first strand
Strand 2	B	788	790	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y3M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3M