Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y3T entry

There are 3 chains in PDB entry 5Y3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2THR 136
B
 GLY 473TRP 629
C
 LYS 169PRO 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5Y3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 21Right-handed alpha
Helix 2
AA2
A
23 37Right-handed alpha
Helix 3
AA3
A
80 93Right-handed alpha
Helix 4
AA4
A
95 97Right-handed 310
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
B
474 495Right-handed alpha
Helix 7
AA7
B
498 510Right-handed alpha
Helix 8
AA8
B
513 537Right-handed alpha
Helix 9
AA9
B
538 541Right-handed 310
Helix 10
AB1
B
544 555Right-handed alpha
Helix 11
AB2
B
558 580Right-handed alpha
Helix 12
AB3
B
583 586Right-handed 310
Helix 13
AB4
B
587 595Right-handed alpha
Helix 14
AB5
B
598 618Right-handed alpha
Helix 15
AB6
C
170 183Right-handed alpha
Helix 16
AB7
C
184 198Right-handed alpha
Helix 17
AB8
C
208 211Right-handed 310
Helix 18
AB9
C
246 259Right-handed alpha
Helix 19
AC1
C
261 263Right-handed 310
Helix 20
AC2
C
280 284Right-handed 310
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There are 3 sheets in PDB entry 5Y3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
C
202 206anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
125 130parallel
Strand 4
A
99 102anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 241first strand
Strand 2
C
216 223anti-parallel
Strand 3
C
291 296parallel
Strand 4
C
265 269anti-parallel
Strand 5
C
272 273anti-parallel
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