Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y3Z entry

There are 2 chains in PDB entry 5Y3Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 137HIS 277
B
 LEU 136HIS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5Y3Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 187Right-handed alpha
Helix 2
AA2
A
210 229Right-handed alpha
Helix 3
AA3
A
254 259Right-handed 310
Helix 4
AA4
A
267 277Right-handed alpha
Helix 5
AA5
B
170 185Right-handed alpha
Helix 6
AA6
B
210 229Right-handed alpha
Helix 7
AA7
B
255 259Right-handed 310
Helix 8
AA8
B
267 276Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y3Z.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
191 196anti-parallel
Strand 5
A
236 241parallel
Strand 6
B
236 241anti-parallel
Strand 7
B
191 196parallel
Strand 8
B
260 266anti-parallel
Strand 9
B
148 154anti-parallel
Strand 10
B
139 145anti-parallel
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