Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y42

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y42 entry

There are 6 chains in PDB entry 5Y42 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	LEU 44
B	ASN 48	THR 253
C	ASN 1	TYR 264
D	ALA 4	LEU 44
E	ASN 48	THR 253
F	ASN 1	TYR 264

There are 36 helices in PDB entry 5Y42. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	27	Right-handed alpha
Helix 2	AA2	B	92	99	Right-handed alpha
Helix 3	AA3	B	113	122	Right-handed alpha
Helix 4	AA4	B	124	128	Right-handed 310
Helix 5	AA5	B	131	144	Right-handed alpha
Helix 6	AA6	B	149	167	Right-handed alpha
Helix 7	AA7	B	167	180	Right-handed alpha
Helix 8	AA8	B	187	208	Right-handed alpha
Helix 9	AA9	B	235	240	Right-handed alpha
Helix 10	AB1	C	14	18	Right-handed 310
Helix 11	AB2	C	24	26	Right-handed 310
Helix 12	AB3	C	41	45	Right-handed 310
Helix 13	AB4	C	64	69	Right-handed alpha
Helix 14	AB5	C	81	85	Right-handed 310
Helix 15	AB6	C	145	147	Right-handed 310
Helix 16	AB7	C	168	171	Right-handed 310
Helix 17	AB8	C	239	245	Right-handed 310
Helix 18	AB9	C	255	259	Right-handed 310
Helix 19	AC1	D	12	27	Right-handed alpha
Helix 20	AC2	E	92	99	Right-handed alpha
Helix 21	AC3	E	113	122	Right-handed alpha
Helix 22	AC4	E	124	128	Right-handed 310
Helix 23	AC5	E	131	144	Right-handed alpha
Helix 24	AC6	E	149	167	Right-handed alpha
Helix 25	AC7	E	167	180	Right-handed alpha
Helix 26	AC8	E	187	208	Right-handed alpha
Helix 27	AC9	E	235	240	Right-handed alpha
Helix 28	AD1	F	14	18	Right-handed 310
Helix 29	AD2	F	24	26	Right-handed 310
Helix 30	AD3	F	41	45	Right-handed 310
Helix 31	AD4	F	64	69	Right-handed alpha
Helix 32	AD5	F	81	86	Right-handed alpha
Helix 33	AD6	F	144	148	Right-handed 310
Helix 34	AD7	F	168	171	Right-handed 310
Helix 35	AD8	F	239	245	Right-handed 310
Helix 36	AD9	F	255	259	Right-handed 310

There are 21 sheets in PDB entry 5Y42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	B	50	56	parallel
Strand 3	B	62	68	anti-parallel
Strand 4	B	73	79	anti-parallel
Strand 5	B	84	87	anti-parallel
Strand 6	B	104	107	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	34	first strand
Strand 2	A	37	40	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	221	first strand
Strand 2	B	227	232	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	46	49	anti-parallel
Strand 3	C	54	56	anti-parallel
Strand 4	C	59	62	anti-parallel
Strand 5	C	73	75	anti-parallel
Strand 6	C	31	36	anti-parallel
Strand 7	C	19	22	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	130	131	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	95	96	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	117	120	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	247	250	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	158	162	anti-parallel
Strand 5	C	148	153	anti-parallel
Strand 6	C	138	144	anti-parallel
Strand 7	C	261	263	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	247	250	anti-parallel
Strand 3	C	201	208	anti-parallel
Strand 4	C	186	198	anti-parallel
Strand 5	C	181	183	anti-parallel
Strand 6	C	173	175	anti-parallel
Strand 7	C	138	144	anti-parallel
Strand 8	C	261	263	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	225	226	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	E	50	56	parallel
Strand 3	E	62	68	anti-parallel
Strand 4	E	73	79	anti-parallel
Strand 5	E	84	87	anti-parallel
Strand 6	E	104	107	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	34	first strand
Strand 2	D	37	40	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	221	first strand
Strand 2	E	227	232	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	10	first strand
Strand 2	F	46	49	anti-parallel
Strand 3	F	54	56	anti-parallel
Strand 4	F	59	62	anti-parallel
Strand 5	F	73	75	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	130	131	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	22	first strand
Strand 2	F	33	36	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	95	96	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	106	first strand
Strand 2	F	117	120	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	237	first strand
Strand 2	F	247	250	anti-parallel
Strand 3	F	201	208	anti-parallel
Strand 4	F	186	198	anti-parallel
Strand 5	F	181	183	anti-parallel
Strand 6	F	173	175	anti-parallel
Strand 7	F	138	143	anti-parallel
Strand 8	F	261	263	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	153	first strand
Strand 2	F	158	162	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	219	first strand
Strand 2	F	225	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y42

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y42