Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y49 entry

There are 4 chains in PDB entry 5Y49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 255VAL 481
B
 LEU 255VAL 481
D
 GLU 686LYS 696
E
 GLU 686ASP 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5Y49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
256 273Right-handed alpha
Helix 2
AA2
A
276 286Right-handed alpha
Helix 3
AA3
A
289 314Right-handed alpha
Helix 4
AA4
A
317 321Right-handed 310
Helix 5
AA5
A
322 347Right-handed alpha
Helix 6
AA6
A
355 364Right-handed alpha
Helix 7
AA7
A
368 384Right-handed alpha
Helix 8
AA8
A
388 401Right-handed alpha
Helix 9
AA9
A
410 433Right-handed alpha
Helix 10
AB1
A
438 452Right-handed alpha
Helix 11
AB2
A
452 467Right-handed alpha
Helix 12
AB3
A
472 479Right-handed alpha
Helix 13
AB4
B
256 272Right-handed alpha
Helix 14
AB5
B
276 286Right-handed alpha
Helix 15
AB6
B
289 313Right-handed alpha
Helix 16
AB7
B
317 321Right-handed 310
Helix 17
AB8
B
322 349Right-handed alpha
Helix 18
AB9
B
352 364Right-handed alpha
Helix 19
AC1
B
368 385Right-handed alpha
Helix 20
AC2
B
388 401Right-handed alpha
Helix 21
AC3
B
410 433Right-handed alpha
Helix 22
AC4
B
437 451Right-handed alpha
Helix 23
AC5
B
452 467Right-handed alpha
Helix 24
AC6
B
472 479Right-handed alpha
Helix 25
AC7
D
687 696Right-handed alpha
Helix 26
AC8
E
687 695Right-handed alpha
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There are no sheets in PDB entry 5Y49
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il