Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y4D entry

There is 1 chain in PDB entry 5Y4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 1582LEU 2682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5Y4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1602 1614Right-handed alpha
Helix 2
AA2
A
2028 2042Right-handed alpha
Helix 3
AA3
A
2043 2053Right-handed alpha
Helix 4
AA4
A
2066 2075Right-handed alpha
Helix 5
AA5
A
2076 2087Right-handed alpha
Helix 6
AA6
A
2099 2108Right-handed alpha
Helix 7
AA7
A
2109 2119Right-handed alpha
Helix 8
AA8
A
2132 2140Right-handed alpha
Helix 9
AA9
A
2142 2152Right-handed alpha
Helix 10
AB1
A
2165 2174Right-handed alpha
Helix 11
AB2
A
2175 2185Right-handed alpha
Helix 12
AB3
A
2192 2203Right-handed alpha
Helix 13
AB4
A
2204 2212Right-handed alpha
Helix 14
AB5
A
2224 2228Right-handed 310
Helix 15
AB6
A
2235 2244Right-handed alpha
Helix 16
AB7
A
2245 2255Right-handed alpha
Helix 17
AB8
A
2268 2277Right-handed alpha
Helix 18
AB9
A
2278 2288Right-handed alpha
Helix 19
AC1
A
2301 2309Right-handed alpha
Helix 20
AC2
A
2311 2321Right-handed alpha
Helix 21
AC3
A
2334 2342Right-handed alpha
Helix 22
AC4
A
2344 2354Right-handed alpha
Helix 23
AC5
A
2367 2375Right-handed alpha
Helix 24
AC6
A
2377 2387Right-handed alpha
Helix 25
AC7
A
2400 2408Right-handed alpha
Helix 26
AC8
A
2410 2420Right-handed alpha
Helix 27
AC9
A
2433 2441Right-handed alpha
Helix 28
AD1
A
2443 2453Right-handed alpha
Helix 29
AD2
A
2466 2475Right-handed alpha
Helix 30
AD3
A
2476 2486Right-handed alpha
Helix 31
AD4
A
2494 2498Right-handed 310
Helix 32
AD5
A
2499 2507Right-handed alpha
Helix 33
AD6
A
2509 2519Right-handed alpha
Helix 34
AD7
A
2532 2541Right-handed alpha
Helix 35
AD8
A
2542 2552Right-handed alpha
Helix 36
AD9
A
2565 2574Right-handed alpha
Helix 37
AE1
A
2575 2585Right-handed alpha
Helix 38
AE2
A
2598 2606Right-handed alpha
Helix 39
AE3
A
2608 2619Right-handed alpha
Helix 40
AE4
A
2631 2639Right-handed alpha
Helix 41
AE5
A
2641 2651Right-handed alpha
Helix 42
AE6
A
2664 2673Right-handed alpha
Helix 43
AE7
A
2674 2682Right-handed alpha
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There are no sheets in PDB entry 5Y4D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il