Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y4E entry

There are 2 chains in PDB entry 5Y4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 883GLU 1488
B
 GLY 883THR 1487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5Y4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1268 1276Right-handed alpha
Helix 2
AA2
A
1278 1288Right-handed alpha
Helix 3
AA3
A
1301 1309Right-handed alpha
Helix 4
AA4
A
1311 1321Right-handed alpha
Helix 5
AA5
A
1334 1342Right-handed alpha
Helix 6
AA6
A
1344 1354Right-handed alpha
Helix 7
AA7
A
1367 1376Right-handed alpha
Helix 8
AA8
A
1377 1387Right-handed alpha
Helix 9
AA9
A
1395 1399Right-handed 310
Helix 10
AB1
A
1400 1408Right-handed alpha
Helix 11
AB2
A
1410 1420Right-handed alpha
Helix 12
AB3
A
1433 1442Right-handed alpha
Helix 13
AB4
A
1443 1453Right-handed alpha
Helix 14
AB5
A
1466 1474Right-handed alpha
Helix 15
AB6
A
1476 1488Right-handed alpha
Helix 16
AB7
B
1268 1277Right-handed alpha
Helix 17
AB8
B
1278 1288Right-handed alpha
Helix 18
AB9
B
1301 1309Right-handed alpha
Helix 19
AC1
B
1311 1321Right-handed alpha
Helix 20
AC2
B
1334 1342Right-handed alpha
Helix 21
AC3
B
1344 1354Right-handed alpha
Helix 22
AC4
B
1367 1376Right-handed alpha
Helix 23
AC5
B
1377 1387Right-handed alpha
Helix 24
AC6
B
1400 1408Right-handed alpha
Helix 25
AC7
B
1410 1420Right-handed alpha
Helix 26
AC8
B
1433 1442Right-handed alpha
Helix 27
AC9
B
1443 1453Right-handed alpha
Helix 28
AD1
B
1466 1474Right-handed alpha
Helix 29
AD2
B
1476 1487Right-handed alpha
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There are no sheets in PDB entry 5Y4E
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