Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y50 entry

There is 1 chain in PDB entry 5Y50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21MET 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5Y50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 57Right-handed alpha
Helix 2
AA2
A
59 77Right-handed alpha
Helix 3
AA3
A
77 86Right-handed alpha
Helix 4
AA4
A
87 98Right-handed alpha
Helix 5
AA5
A
100 128Right-handed alpha
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
139 153Right-handed alpha
Helix 8
AA8
A
153 173Right-handed alpha
Helix 9
AA9
A
175 199Right-handed alpha
Helix 10
AB1
A
205 230Right-handed alpha
Helix 11
AB2
A
231 234Right-handed 310
Helix 12
AB3
A
242 247Right-handed alpha
Helix 13
AB4
A
247 276Right-handed alpha
Helix 14
AB5
A
277 279Right-handed 310
Helix 15
AB6
A
281 320Right-handed alpha
Helix 16
AB7
A
322 351Right-handed alpha
Helix 17
AB8
A
351 356Right-handed alpha
Helix 18
AB9
A
357 359Right-handed 310
Helix 19
AC1
A
362 372Right-handed alpha
Helix 20
AC2
A
372 396Right-handed alpha
Helix 21
AC3
A
400 412Right-handed alpha
Helix 22
AC4
A
413 423Right-handed alpha
Helix 23
AC5
A
427 453Right-handed alpha
Helix 24
AC6
A
455 468Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5Y50
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il