Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y51

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y51 entry

There are 6 chains in PDB entry 5Y51 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TYR 254
B	THR 2	TYR 254
C	THR 2	TYR 254
D	THR 2	TYR 254
E	THR 2	TYR 254
F	THR 2	TYR 254

There are 93 helices in PDB entry 5Y51. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	20	Right-handed 310
Helix 2	AA2	A	22	29	Right-handed alpha
Helix 3	AA3	A	47	51	Right-handed 310
Helix 4	AA4	A	53	68	Right-handed alpha
Helix 5	AA5	A	79	91	Right-handed alpha
Helix 6	AA6	A	112	117	Right-handed alpha
Helix 7	AA7	A	125	131	Right-handed alpha
Helix 8	AA8	A	147	156	Right-handed alpha
Helix 9	AA9	A	166	170	Right-handed 310
Helix 10	AB1	A	176	181	Right-handed alpha
Helix 11	AB2	A	186	192	Right-handed 310
Helix 12	AB3	A	206	217	Right-handed alpha
Helix 13	AB4	A	231	236	Right-handed alpha
Helix 14	AB5	A	236	250	Right-handed alpha
Helix 15	AB6	A	251	254	Right-handed 310
Helix 16	AB7	B	15	20	Right-handed 310
Helix 17	AB8	B	22	28	Right-handed alpha
Helix 18	AB9	B	47	51	Right-handed 310
Helix 19	AC1	B	53	58	Right-handed alpha
Helix 20	AC2	B	58	66	Right-handed alpha
Helix 21	AC3	B	79	91	Right-handed alpha
Helix 22	AC4	B	112	117	Right-handed alpha
Helix 23	AC5	B	125	131	Right-handed alpha
Helix 24	AC6	B	147	156	Right-handed alpha
Helix 25	AC7	B	166	170	Right-handed 310
Helix 26	AC8	B	177	180	Right-handed 310
Helix 27	AC9	B	186	192	Right-handed 310
Helix 28	AD1	B	206	217	Right-handed alpha
Helix 29	AD2	B	231	236	Right-handed alpha
Helix 30	AD3	B	236	250	Right-handed alpha
Helix 31	AD4	B	251	254	Right-handed 310
Helix 32	AD5	C	15	20	Right-handed 310
Helix 33	AD6	C	22	28	Right-handed alpha
Helix 34	AD7	C	46	51	Right-handed 310
Helix 35	AD8	C	53	58	Right-handed alpha
Helix 36	AD9	C	58	68	Right-handed alpha
Helix 37	AE1	C	79	91	Right-handed alpha
Helix 38	AE2	C	112	117	Right-handed alpha
Helix 39	AE3	C	125	131	Right-handed alpha
Helix 40	AE4	C	147	156	Right-handed alpha
Helix 41	AE5	C	166	170	Right-handed 310
Helix 42	AE6	C	176	181	Right-handed alpha
Helix 43	AE7	C	186	192	Right-handed 310
Helix 44	AE8	C	206	217	Right-handed alpha
Helix 45	AE9	C	231	236	Right-handed alpha
Helix 46	AF1	C	236	250	Right-handed alpha
Helix 47	AF2	C	251	254	Right-handed 310
Helix 48	AF3	D	15	20	Right-handed 310
Helix 49	AF4	D	22	29	Right-handed alpha
Helix 50	AF5	D	47	51	Right-handed 310
Helix 51	AF6	D	53	58	Right-handed alpha
Helix 52	AF7	D	58	68	Right-handed alpha
Helix 53	AF8	D	79	91	Right-handed alpha
Helix 54	AF9	D	112	117	Right-handed alpha
Helix 55	AG1	D	125	131	Right-handed alpha
Helix 56	AG2	D	147	156	Right-handed alpha
Helix 57	AG3	D	166	170	Right-handed 310
Helix 58	AG4	D	177	180	Right-handed 310
Helix 59	AG5	D	186	192	Right-handed 310
Helix 60	AG6	D	206	217	Right-handed alpha
Helix 61	AG7	D	231	236	Right-handed alpha
Helix 62	AG8	D	236	249	Right-handed alpha
Helix 63	AG9	E	15	20	Right-handed 310
Helix 64	AH1	E	22	28	Right-handed alpha
Helix 65	AH2	E	47	51	Right-handed 310
Helix 66	AH3	E	53	58	Right-handed alpha
Helix 67	AH4	E	58	67	Right-handed alpha
Helix 68	AH5	E	80	91	Right-handed alpha
Helix 69	AH6	E	112	117	Right-handed alpha
Helix 70	AH7	E	125	131	Right-handed alpha
Helix 71	AH8	E	147	155	Right-handed alpha
Helix 72	AH9	E	166	170	Right-handed 310
Helix 73	AI1	E	176	181	Right-handed alpha
Helix 74	AI2	E	186	192	Right-handed 310
Helix 75	AI3	E	206	215	Right-handed alpha
Helix 76	AI4	E	231	236	Right-handed alpha
Helix 77	AI5	E	236	249	Right-handed alpha
Helix 78	AI6	E	250	254	Right-handed 310
Helix 79	AI7	F	15	20	Right-handed 310
Helix 80	AI8	F	22	28	Right-handed alpha
Helix 81	AI9	F	47	51	Right-handed 310
Helix 82	AJ1	F	53	68	Right-handed alpha
Helix 83	AJ2	F	79	91	Right-handed alpha
Helix 84	AJ3	F	112	117	Right-handed alpha
Helix 85	AJ4	F	125	131	Right-handed alpha
Helix 86	AJ5	F	147	156	Right-handed alpha
Helix 87	AJ6	F	166	170	Right-handed 310
Helix 88	AJ7	F	176	181	Right-handed alpha
Helix 89	AJ8	F	186	190	Right-handed 310
Helix 90	AJ9	F	206	216	Right-handed alpha
Helix 91	AK1	F	231	236	Right-handed alpha
Helix 92	AK2	F	236	250	Right-handed alpha
Helix 93	AK3	F	251	254	Right-handed 310

There are 12 sheets in PDB entry 5Y51. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	3	9	parallel
Strand 3	A	71	77	parallel
Strand 4	A	95	101	parallel
Strand 5	A	194	199	parallel
Strand 6	A	222	226	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	174	175	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	3	9	parallel
Strand 3	B	71	77	parallel
Strand 4	B	95	101	parallel
Strand 5	B	194	199	parallel
Strand 6	B	222	226	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	140	143	anti-parallel
Strand 3	B	174	175	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	3	9	parallel
Strand 3	C	71	77	parallel
Strand 4	C	95	101	parallel
Strand 5	C	194	199	parallel
Strand 6	C	222	226	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	140	143	anti-parallel
Strand 3	C	174	175	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	3	9	parallel
Strand 3	D	71	77	parallel
Strand 4	D	95	101	parallel
Strand 5	D	194	199	parallel
Strand 6	D	222	226	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	135	first strand
Strand 2	D	140	143	anti-parallel
Strand 3	D	174	175	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	3	9	parallel
Strand 3	E	71	77	parallel
Strand 4	E	95	101	parallel
Strand 5	E	194	199	parallel
Strand 6	E	222	226	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	135	first strand
Strand 2	E	140	143	anti-parallel
Strand 3	E	173	175	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	3	9	parallel
Strand 3	F	71	77	parallel
Strand 4	F	95	101	parallel
Strand 5	F	194	199	parallel
Strand 6	F	222	226	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	135	first strand
Strand 2	F	140	143	anti-parallel
Strand 3	F	174	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y51

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y51