Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y59 entry

There are 2 chains in PDB entry 5Y59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2THR 199
C
 ASN 104THR 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5Y59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
13 19Right-handed alpha
Helix 2
AA2
B
20 35Right-handed alpha
Helix 3
AA3
B
37 42Right-handed alpha
Helix 4
AA4
B
76 95Right-handed alpha
Helix 5
AA5
B
105 122Right-handed alpha
Helix 6
AA6
B
146 154Right-handed alpha
Helix 7
AA7
B
175 183Right-handed alpha
Helix 8
AA8
B
192 194Right-handed 310
Helix 9
AA9
C
105 115Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y59.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 72first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
4 11parallel
Strand 4
B
127 134parallel
Strand 5
B
157 162parallel
Strand 6
B
187 190parallel
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