Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y5A entry

There are 2 chains in PDB entry 5Y5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7LYS 600
B
 ILE 213THR 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5Y5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
78 90Right-handed alpha
Helix 4
AA4
A
90 107Right-handed alpha
Helix 5
AA5
A
113 146Right-handed alpha
Helix 6
AA6
A
155 160Right-handed alpha
Helix 7
AA7
A
179 208Right-handed alpha
Helix 8
AA8
A
214 217Right-handed 310
Helix 9
AA9
A
218 232Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
251 265Right-handed alpha
Helix 12
AB3
A
271 281Right-handed alpha
Helix 13
AB4
A
285 300Right-handed alpha
Helix 14
AB5
A
306 317Right-handed alpha
Helix 15
AB6
A
318 327Right-handed alpha
Helix 16
AB7
A
336 338Right-handed 310
Helix 17
AB8
A
339 381Right-handed alpha
Helix 18
AB9
A
417 442Right-handed alpha
Helix 19
AC1
A
443 446Right-handed 310
Helix 20
AC2
A
453 467Right-handed alpha
Helix 21
AC3
A
469 478Right-handed alpha
Helix 22
AC4
A
479 496Right-handed alpha
Helix 23
AC5
A
515 521Right-handed alpha
Helix 24
AC6
A
524 528Right-handed 310
Helix 25
AC7
A
536 542Right-handed 310
Helix 26
AC8
A
544 549Right-handed alpha
Helix 27
AC9
A
558 580Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5Y5A.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 588first strand
Strand 2
A
593 596anti-parallel
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