Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y5G entry

There is 1 chain in PDB entry 5Y5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4PHE 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5Y5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 29Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
73 80Right-handed alpha
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
92 99Right-handed alpha
Helix 6
AA6
A
100 105Right-handed 310
Helix 7
AA7
A
106 113Right-handed alpha
Helix 8
AA8
A
113 132Right-handed alpha
Helix 9
AA9
A
140 144Right-handed alpha
Helix 10
AB1
A
146 158Right-handed alpha
Helix 11
AB2
A
160 162Right-handed 310
Helix 12
AB3
A
163 176Right-handed alpha
Helix 13
AB4
A
180 205Right-handed alpha
Helix 14
AB5
A
209 218Right-handed alpha
Helix 15
AB6
A
225 258Right-handed alpha
Helix 16
AB7
A
258 268Right-handed alpha
Helix 17
AB8
A
271 283Right-handed alpha
Helix 18
AB9
A
314 319Right-handed alpha
Helix 19
AC1
A
347 351Right-handed 310
Helix 20
AC2
A
354 373Right-handed alpha
Helix 21
AC3
A
381 385Right-handed 310
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There are 4 sheets in PDB entry 5Y5G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
310 313parallel
Strand 4
A
291 294anti-parallel
Strand 5
A
60 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
400 402anti-parallel
Strand 3
A
377 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
303 305anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
396 398anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il