Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y5P entry

There are 6 chains in PDB entry 5Y5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASN 171
B
 SER 3THR 169
C
 ASP 2LYS 150
D
 MET 1ASN 171
E
 SER 3ARG 158
F
 SER 3THR 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5Y5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 4Right-handed 310
Helix 2
AA2
A
71 79Right-handed alpha
Helix 3
AA3
A
151 153Right-handed 310
Helix 4
AA4
B
71 79Right-handed alpha
Helix 5
AA5
B
151 153Right-handed 310
Helix 6
AA6
C
2 4Right-handed 310
Helix 7
AA7
C
71 79Right-handed alpha
Helix 8
AA8
D
2 4Right-handed 310
Helix 9
AA9
D
71 79Right-handed alpha
Helix 10
AB1
D
151 153Right-handed 310
Helix 11
AB2
E
71 79Right-handed alpha
Helix 12
AB3
F
71 79Right-handed alpha
Helix 13
AB4
F
151 153Right-handed 310
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There are 23 sheets in PDB entry 5Y5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
6 11anti-parallel
Strand 3
C
129 135parallel
Strand 4
C
142 149anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
86 87anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
108 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
80 81anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 149first strand
Strand 2
A
129 136anti-parallel
Strand 3
B
6 11parallel
Strand 4
B
55 59anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
117 123anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
86 87anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
108 110anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
96 101anti-parallel
Strand 3
B
80 81anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 149first strand
Strand 2
B
129 135anti-parallel
Strand 3
C
6 11parallel
Strand 4
C
55 59anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
117 123anti-parallel
Strand 3
C
64 69anti-parallel
Strand 4
C
86 87anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 43first strand
Strand 2
C
108 110anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 52first strand
Strand 2
C
96 101anti-parallel
Strand 3
C
80 81anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 59first strand
Strand 2
D
6 11anti-parallel
Strand 3
F
129 135parallel
Strand 4
F
142 149anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 35first strand
Strand 2
D
117 123anti-parallel
Strand 3
D
64 69anti-parallel
Strand 4
D
86 87anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 43first strand
Strand 2
D
108 110anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 52first strand
Strand 2
D
96 101anti-parallel
Strand 3
D
80 81anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 149first strand
Strand 2
D
129 135anti-parallel
Strand 3
E
6 11parallel
Strand 4
E
48 59anti-parallel
Strand 5
E
94 101anti-parallel
Strand 6
E
80 81anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
117 123anti-parallel
Strand 3
E
64 69anti-parallel
Strand 4
E
86 87anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 43first strand
Strand 2
E
108 110anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
142 149first strand
Strand 2
E
129 135anti-parallel
Strand 3
F
6 11parallel
Strand 4
F
55 59anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 35first strand
Strand 2
F
117 123anti-parallel
Strand 3
F
64 69anti-parallel
Strand 4
F
86 87anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 43first strand
Strand 2
F
108 110anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
48 52first strand
Strand 2
F
96 101anti-parallel
Strand 3
F
80 81anti-parallel
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