Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y5S entry

There are 7 chains in PDB entry 5Y5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 23	THR 333
L	ALA 2	TRP 281
M	PRO 2	THR 319
H	ILE 5	LEU 259
A	ALA 6	GLY 59
B	SER 5	LEU 46
D	ASN 5	LEU 8

There are114 helices in PDB entry 5Y5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	45	56	Right-handed alpha
Helix 2	AA2	C	71	76	Right-handed alpha
Helix 3	AA3	C	86	102	Right-handed alpha
Helix 4	AA4	C	106	110	Right-handed 310
Helix 5	AA5	C	121	141	Right-handed alpha
Helix 6	AA6	C	141	146	Right-handed alpha
Helix 7	AA7	C	151	157	Right-handed alpha
Helix 8	AA8	C	187	191	Right-handed 310
Helix 9	AA9	C	199	204	Right-handed alpha
Helix 10	AB1	C	225	244	Right-handed alpha
Helix 11	AB2	C	246	250	Right-handed 310
Helix 12	AB3	C	258	262	Right-handed 310
Helix 13	AB4	C	263	283	Right-handed alpha
Helix 14	AB5	C	284	288	Right-handed 310
Helix 15	AB6	C	292	296	Right-handed 310
Helix 16	AB7	C	306	312	Right-handed alpha
Helix 17	AB8	C	316	321	Right-handed 310
Helix 18	AB9	C	323	331	Right-handed 310
Helix 19	AC1	L	7	11	Right-handed 310
Helix 20	AC2	L	19	23	Right-handed 310
Helix 21	AC3	L	32	57	Right-handed alpha
Helix 22	AC4	L	79	83	Right-handed 310
Helix 23	AC5	L	88	91	Right-handed 310
Helix 24	AC6	L	92	121	Right-handed alpha
Helix 25	AC7	L	124	142	Right-handed alpha
Helix 26	AC8	L	142	149	Right-handed alpha
Helix 27	AC9	L	150	154	Right-handed 310
Helix 28	AD1	L	160	172	Right-handed alpha
Helix 29	AD2	L	173	174	Right-handed 310
Helix 30	AD3	L	175	178	Right-handed 310
Helix 31	AD4	L	179	208	Right-handed alpha
Helix 32	AD5	L	217	230	Right-handed alpha
Helix 33	AD6	L	236	259	Right-handed alpha
Helix 34	AD7	L	267	272	Right-handed alpha
Helix 35	AD8	L	272	277	Right-handed alpha
Helix 36	AD9	M	39	44	Right-handed alpha
Helix 37	AE1	M	54	78	Right-handed alpha
Helix 38	AE2	M	82	90	Right-handed alpha
Helix 39	AE3	M	91	93	Right-handed 310
Helix 40	AE4	M	99	103	Right-handed 310
Helix 41	AE5	M	112	140	Right-handed alpha
Helix 42	AE6	M	144	162	Right-handed alpha
Helix 43	AE7	M	162	169	Right-handed alpha
Helix 44	AE8	M	170	174	Right-handed 310
Helix 45	AE9	M	178	193	Right-handed alpha
Helix 46	AF1	M	195	198	Right-handed 310
Helix 47	AF2	M	199	226	Right-handed alpha
Helix 48	AF3	M	227	230	Right-handed 310
Helix 49	AF4	M	233	240	Right-handed alpha
Helix 50	AF5	M	242	257	Right-handed alpha
Helix 51	AF6	M	263	286	Right-handed alpha
Helix 52	AF7	M	293	301	Right-handed alpha
Helix 53	AF8	H	10	34	Right-handed alpha
Helix 54	AF9	H	43	49	Right-handed alpha
Helix 55	AG1	H	105	109	Right-handed 310
Helix 56	AG2	H	111	115	Right-handed 310
Helix 57	AG3	H	198	200	Right-handed 310
Helix 58	AG4	H	215	222	Right-handed 310
Helix 59	AG5	H	232	250	Right-handed alpha
Helix 60	AG6	H	251	256	Right-handed 310
Helix 61	AG7	A	7	14	Right-handed 310
Helix 62	AG8	A	16	41	Right-handed alpha
Helix 63	AG9	B	10	43	Right-handed alpha
Helix 64	AH1	D	6	14	Right-handed 310
Helix 65	AH2	D	16	41	Right-handed alpha
Helix 66	AH3	D	54	59	Right-handed alpha
Helix 67	AH4	E	10	43	Right-handed alpha
Helix 68	AH5	F	7	14	Right-handed 310
Helix 69	AH6	F	16	41	Right-handed alpha
Helix 70	AH7	G	10	43	Right-handed alpha
Helix 71	AH8	I	7	14	Right-handed 310
Helix 72	AH9	I	16	41	Right-handed alpha
Helix 73	AI1	J	10	43	Right-handed alpha
Helix 74	AI2	K	7	9	Right-handed 310
Helix 75	AI3	K	10	15	Right-handed alpha
Helix 76	AI4	K	16	41	Right-handed alpha
Helix 77	AI5	N	10	43	Right-handed alpha
Helix 78	AI6	O	7	14	Right-handed 310
Helix 79	AI7	O	16	41	Right-handed alpha
Helix 80	AI8	O	55	59	Right-handed 310
Helix 81	AI9	P	10	43	Right-handed alpha
Helix 82	AJ1	Q	7	14	Right-handed 310
Helix 83	AJ2	Q	16	41	Right-handed alpha
Helix 84	AJ3	Q	54	59	Right-handed alpha
Helix 85	AJ4	R	10	43	Right-handed alpha
Helix 86	AJ5	S	7	14	Right-handed 310
Helix 87	AJ6	S	16	41	Right-handed alpha
Helix 88	AJ7	T	10	43	Right-handed alpha
Helix 89	AJ8	U	5	14	Right-handed 310
Helix 90	AJ9	U	16	41	Right-handed alpha
Helix 91	AK1	U	54	60	Right-handed alpha
Helix 92	AK2	V	10	43	Right-handed alpha
Helix 93	AK3	W	7	14	Right-handed 310
Helix 94	AK4	W	16	41	Right-handed alpha
Helix 95	AK5	W	54	60	Right-handed alpha
Helix 96	AK6	X	10	43	Right-handed alpha
Helix 97	AK7	Y	7	14	Right-handed 310
Helix 98	AK8	Y	16	41	Right-handed alpha
Helix 99	AK9	Z	10	43	Right-handed alpha
Helix 100	AL1	1	7	14	Right-handed 310
Helix 101	AL2	1	16	41	Right-handed alpha
Helix 102	AL3	2	10	43	Right-handed alpha
Helix 103	AL4	3	7	14	Right-handed 310
Helix 104	AL5	3	16	41	Right-handed alpha
Helix 105	AL6	4	10	43	Right-handed alpha
Helix 106	AL7	5	7	14	Right-handed 310
Helix 107	AL8	5	16	41	Right-handed alpha
Helix 108	AL9	6	10	43	Right-handed alpha
Helix 109	AM1	7	7	14	Right-handed 310
Helix 110	AM2	7	16	41	Right-handed alpha
Helix 111	AM3	8	10	43	Right-handed alpha
Helix 112	AM4	9	7	14	Right-handed 310
Helix 113	AM5	9	16	41	Right-handed alpha
Helix 114	AM6	0	10	43	Right-handed alpha

There are 9 sheets in PDB entry 5Y5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	41	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	75	first strand
Strand 2	L	157	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	14	first strand
Strand 2	H	143	144	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	47	48	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	69	first strand
Strand 2	H	74	78	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	163	173	anti-parallel
Strand 3	H	179	186	anti-parallel
Strand 4	H	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	163	173	anti-parallel
Strand 3	H	155	157	anti-parallel
Strand 4	H	208	210	parallel
Strand 5	H	201	203	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5S