Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y5Y entry

There are 13 chains in PDB entry 5Y5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 577
B	MET 1	LEU 577
C	MET 1	LEU 577
D	LYS 5	TYR 463
E	LYS 5	TYR 463
F	LYS 5	TYR 463
G	SER 2	GLY 211
H	MET 1	PHE 100
I	GLU 60	PRO 120
J	GLU 35	GLY 188
K	GLU 60	PRO 120
L	GLU 35	GLY 188
M	ASP 3	CYS 322

There are149 helices in PDB entry 5Y5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	209	213	Right-handed 310
Helix 3	AA3	A	235	239	Right-handed 310
Helix 4	AA4	A	240	244	Right-handed 310
Helix 5	AA5	A	258	264	Right-handed alpha
Helix 6	AA6	A	268	272	Right-handed 310
Helix 7	AA7	A	280	284	Right-handed 310
Helix 8	AA8	A	297	317	Right-handed alpha
Helix 9	AA9	A	328	342	Right-handed alpha
Helix 10	AB1	A	346	350	Right-handed 310
Helix 11	AB2	A	355	363	Right-handed alpha
Helix 12	AB3	A	393	398	Right-handed alpha
Helix 13	AB4	A	411	417	Right-handed alpha
Helix 14	AB5	A	435	443	Right-handed alpha
Helix 15	AB6	A	446	461	Right-handed alpha
Helix 16	AB7	A	461	472	Right-handed alpha
Helix 17	AB8	A	478	494	Right-handed alpha
Helix 18	AB9	A	508	533	Right-handed alpha
Helix 19	AC1	A	535	541	Right-handed alpha
Helix 20	AC2	A	542	551	Right-handed alpha
Helix 21	AC3	A	552	554	Right-handed 310
Helix 22	AC4	A	558	576	Right-handed alpha
Helix 23	AC5	B	91	96	Right-handed alpha
Helix 24	AC6	B	209	216	Right-handed alpha
Helix 25	AC7	B	234	245	Right-handed alpha
Helix 26	AC8	B	260	272	Right-handed alpha
Helix 27	AC9	B	280	283	Right-handed 310
Helix 28	AD1	B	295	316	Right-handed alpha
Helix 29	AD2	B	326	341	Right-handed alpha
Helix 30	AD3	B	356	361	Right-handed alpha
Helix 31	AD4	B	393	403	Right-handed alpha
Helix 32	AD5	B	411	416	Right-handed alpha
Helix 33	AD6	B	423	427	Right-handed 310
Helix 34	AD7	B	431	443	Right-handed alpha
Helix 35	AD8	B	446	466	Right-handed alpha
Helix 36	AD9	B	478	493	Right-handed alpha
Helix 37	AE1	B	508	522	Right-handed alpha
Helix 38	AE2	B	522	531	Right-handed alpha
Helix 39	AE3	B	538	542	Right-handed 310
Helix 40	AE4	B	543	550	Right-handed alpha
Helix 41	AE5	B	558	574	Right-handed alpha
Helix 42	AE6	C	90	98	Right-handed alpha
Helix 43	AE7	C	209	215	Right-handed alpha
Helix 44	AE8	C	233	244	Right-handed alpha
Helix 45	AE9	C	259	269	Right-handed alpha
Helix 46	AF1	C	270	272	Right-handed 310
Helix 47	AF2	C	280	283	Right-handed 310
Helix 48	AF3	C	297	316	Right-handed alpha
Helix 49	AF4	C	326	342	Right-handed alpha
Helix 50	AF5	C	353	364	Right-handed alpha
Helix 51	AF6	C	393	398	Right-handed alpha
Helix 52	AF7	C	410	416	Right-handed alpha
Helix 53	AF8	C	435	443	Right-handed alpha
Helix 54	AF9	C	451	471	Right-handed alpha
Helix 55	AG1	C	477	493	Right-handed alpha
Helix 56	AG2	C	508	533	Right-handed alpha
Helix 57	AG3	C	535	540	Right-handed 310
Helix 58	AG4	C	543	549	Right-handed alpha
Helix 59	AG5	C	555	558	Right-handed 310
Helix 60	AG6	C	559	574	Right-handed alpha
Helix 61	AG7	D	136	141	Right-handed alpha
Helix 62	AG8	D	159	171	Right-handed alpha
Helix 63	AG9	D	181	185	Right-handed 310
Helix 64	AH1	D	199	212	Right-handed alpha
Helix 65	AH2	D	213	215	Right-handed 310
Helix 66	AH3	D	227	250	Right-handed alpha
Helix 67	AH4	D	259	275	Right-handed alpha
Helix 68	AH5	D	286	293	Right-handed alpha
Helix 69	AH6	D	323	333	Right-handed alpha
Helix 70	AH7	D	340	347	Right-handed alpha
Helix 71	AH8	D	374	400	Right-handed alpha
Helix 72	AH9	D	405	421	Right-handed alpha
Helix 73	AI1	D	431	444	Right-handed alpha
Helix 74	AI2	D	455	460	Right-handed alpha
Helix 75	AI3	E	135	142	Right-handed alpha
Helix 76	AI4	E	160	170	Right-handed alpha
Helix 77	AI5	E	181	185	Right-handed 310
Helix 78	AI6	E	197	205	Right-handed alpha
Helix 79	AI7	E	205	210	Right-handed alpha
Helix 80	AI8	E	227	232	Right-handed 310
Helix 81	AI9	E	233	248	Right-handed alpha
Helix 82	AJ1	E	260	272	Right-handed alpha
Helix 83	AJ2	E	286	295	Right-handed alpha
Helix 84	AJ3	E	323	333	Right-handed alpha
Helix 85	AJ4	E	374	400	Right-handed alpha
Helix 86	AJ5	E	408	423	Right-handed alpha
Helix 87	AJ6	E	431	445	Right-handed alpha
Helix 88	AJ7	E	456	461	Right-handed alpha
Helix 89	AJ8	F	159	171	Right-handed alpha
Helix 90	AJ9	F	198	210	Right-handed alpha
Helix 91	AK1	F	227	232	Right-handed 310
Helix 92	AK2	F	233	248	Right-handed alpha
Helix 93	AK3	F	260	275	Right-handed alpha
Helix 94	AK4	F	286	291	Right-handed alpha
Helix 95	AK5	F	292	297	Right-handed alpha
Helix 96	AK6	F	323	333	Right-handed alpha
Helix 97	AK7	F	340	345	Right-handed alpha
Helix 98	AK8	F	375	400	Right-handed alpha
Helix 99	AK9	F	407	421	Right-handed alpha
Helix 100	AL1	F	431	446	Right-handed alpha
Helix 101	AL2	F	455	462	Right-handed alpha
Helix 102	AL3	G	9	46	Right-handed alpha
Helix 103	AL4	G	47	64	Right-handed alpha
Helix 104	AL5	G	71	79	Right-handed alpha
Helix 105	AL6	G	120	132	Right-handed alpha
Helix 106	AL7	G	133	166	Right-handed alpha
Helix 107	AL8	G	167	206	Right-handed alpha
Helix 108	AL9	H	6	16	Right-handed alpha
Helix 109	AM1	H	29	40	Right-handed alpha
Helix 110	AM2	H	56	64	Right-handed alpha
Helix 111	AM3	H	82	94	Right-handed alpha
Helix 112	AM4	I	61	105	Right-handed alpha
Helix 113	AM5	I	108	119	Right-handed alpha
Helix 114	AM6	J	36	92	Right-handed alpha
Helix 115	AM7	J	99	115	Right-handed alpha
Helix 116	AM8	J	126	131	Right-handed alpha
Helix 117	AM9	J	132	137	Right-handed alpha
Helix 118	AN1	J	167	178	Right-handed alpha
Helix 119	AN2	J	180	187	Right-handed alpha
Helix 120	AN3	K	61	104	Right-handed alpha
Helix 121	AN4	K	107	119	Right-handed alpha
Helix 122	AN5	L	36	93	Right-handed alpha
Helix 123	AN6	L	99	115	Right-handed alpha
Helix 124	AN7	L	127	131	Right-handed 310
Helix 125	AN8	L	132	137	Right-handed alpha
Helix 126	AN9	L	167	179	Right-handed alpha
Helix 127	AO1	L	180	187	Right-handed alpha
Helix 128	AO2	M	5	16	Right-handed alpha
Helix 129	AO3	M	17	19	Right-handed 310
Helix 130	AO4	M	21	29	Right-handed alpha
Helix 131	AO5	M	32	42	Right-handed alpha
Helix 132	AO6	M	43	49	Right-handed 310
Helix 133	AO7	M	53	69	Right-handed alpha
Helix 134	AO8	M	71	75	Right-handed 310
Helix 135	AO9	M	78	106	Right-handed alpha
Helix 136	AP1	M	108	112	Right-handed 310
Helix 137	AP2	M	120	129	Right-handed alpha
Helix 138	AP3	M	132	142	Right-handed alpha
Helix 139	AP4	M	145	156	Right-handed alpha
Helix 140	AP5	M	160	182	Right-handed alpha
Helix 141	AP6	M	185	207	Right-handed alpha
Helix 142	AP7	M	213	217	Right-handed 310
Helix 143	AP8	M	226	235	Right-handed alpha
Helix 144	AP9	M	237	243	Right-handed 310
Helix 145	AQ1	M	249	253	Right-handed 310
Helix 146	AQ2	M	257	275	Right-handed alpha
Helix 147	AQ3	M	283	310	Right-handed alpha
Helix 148	AQ4	M	313	318	Right-handed alpha
Helix 149	AQ5	M	319	321	Right-handed 310

There are 44 sheets in PDB entry 5Y5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	37	42	anti-parallel
Strand 5	A	27	30	anti-parallel
Strand 6	A	63	66	anti-parallel
Strand 7	A	2	9	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	185	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	165	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	171	175	anti-parallel
Strand 4	A	180	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	143	145	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	368	369	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	319	325	parallel
Strand 5	A	249	254	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	382	383	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	2	10	anti-parallel
Strand 4	B	13	17	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	39	43	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	136	137	anti-parallel
Strand 3	B	146	147	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	160	first strand
Strand 2	B	173	175	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	250	252	parallel
Strand 3	B	320	324	parallel
Strand 4	B	375	383	parallel
Strand 5	B	367	369	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	250	252	parallel
Strand 3	B	320	324	parallel
Strand 4	B	375	383	parallel
Strand 5	B	223	226	parallel
Strand 6	B	405	406	parallel
Strand 7	B	428	429	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	17	first strand
Strand 2	C	5	10	anti-parallel
Strand 3	E	50	51	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	64	66	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	50	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	F	11	14	anti-parallel
Strand 4	F	18	22	anti-parallel
Strand 5	F	54	58	anti-parallel
Strand 6	F	49	50	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	134	140	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	171	176	anti-parallel
Strand 3	C	180	182	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	198	first strand
Strand 2	C	366	369	anti-parallel
Strand 3	C	375	380	anti-parallel
Strand 4	C	319	322	parallel
Strand 5	C	249	253	parallel
Strand 6	C	285	288	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	218	219	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	382	383	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	407	first strand
Strand 2	C	427	428	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	18	21	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	42	48	anti-parallel
Strand 5	D	31	36	anti-parallel
Strand 6	D	73	75	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	98	99	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	300	301	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	313	315	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	187	196	parallel
Strand 3	D	221	223	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	218	first strand
Strand 2	D	187	196	parallel
Strand 3	D	252	257	parallel
Strand 4	D	307	310	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	19	21	anti-parallel
Strand 3	E	55	57	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	45	first strand
Strand 2	E	32	36	anti-parallel
Strand 3	E	72	77	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	132	first strand
Strand 2	E	172	173	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	313	315	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	189	first strand
Strand 2	E	252	256	parallel
Strand 3	E	307	311	parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	32	36	anti-parallel
Strand 3	F	72	74	anti-parallel
Strand 4	F	6	8	anti-parallel
Strand 5	L	161	166	anti-parallel
Strand 6	L	151	154	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	172	173	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	314	first strand
Strand 2	F	152	153	parallel
Strand 3	F	337	338	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	219	first strand
Strand 2	F	189	191	parallel
Strand 3	F	252	256	parallel
Strand 4	F	307	311	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	92	first strand
Strand 2	G	103	106	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	122	first strand
Strand 2	J	151	155	anti-parallel
Strand 3	J	165	166	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y5Y