Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y61 entry

There are 4 chains in PDB entry 5Y61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 38PRO 190
B
 GLU 45ALA 167
C
 ARG 38PRO 190
D
 GLU 45ALA 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5Y61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 58Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
105 110Right-handed alpha
Helix 4
AA4
A
119 131Right-handed alpha
Helix 5
AA5
A
166 173Right-handed alpha
Helix 6
AA6
A
178 180Right-handed 310
Helix 7
AA7
A
181 189Right-handed alpha
Helix 8
AA8
B
45 50Right-handed 310
Helix 9
AA9
B
58 62Right-handed 310
Helix 10
AB1
B
73 89Right-handed alpha
Helix 11
AB2
B
106 128Right-handed alpha
Helix 12
AB3
B
131 133Right-handed 310
Helix 13
AB4
B
142 144Right-handed 310
Helix 14
AB5
B
151 159Right-handed alpha
Helix 15
AB6
C
40 58Right-handed alpha
Helix 16
AB7
C
79 84Right-handed alpha
Helix 17
AB8
C
105 110Right-handed alpha
Helix 18
AB9
C
119 131Right-handed alpha
Helix 19
AC1
C
166 172Right-handed alpha
Helix 20
AC2
C
178 180Right-handed 310
Helix 21
AC3
C
181 189Right-handed alpha
Helix 22
AC4
D
45 50Right-handed 310
Helix 23
AC5
D
58 62Right-handed 310
Helix 24
AC6
D
73 90Right-handed alpha
Helix 25
AC7
D
106 129Right-handed alpha
Helix 26
AC8
D
131 133Right-handed 310
Helix 27
AC9
D
142 144Right-handed 310
Helix 28
AD1
D
151 159Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5Y61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
68 73parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
Strand 6
A
151 154parallel
Strand 7
A
161 165anti-parallel
Strand 8
B
160 165anti-parallel
Strand 9
B
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
68 73parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
Strand 6
A
151 154parallel
Strand 7
A
161 165anti-parallel
Strand 8
B
160 165anti-parallel
Strand 9
B
95 100anti-parallel
Strand 10
B
135 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
93 99anti-parallel
Strand 3
C
68 73parallel
Strand 4
C
112 115parallel
Strand 5
C
136 139parallel
Strand 6
C
151 154parallel
Strand 7
C
161 165anti-parallel
Strand 8
D
160 165anti-parallel
Strand 9
D
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
93 99anti-parallel
Strand 3
C
68 73parallel
Strand 4
C
112 115parallel
Strand 5
C
136 139parallel
Strand 6
C
151 154parallel
Strand 7
C
161 165anti-parallel
Strand 8
D
160 165anti-parallel
Strand 9
D
95 100anti-parallel
Strand 10
D
135 141parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il