Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y63 entry

There are 5 chains in PDB entry 5Y63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 167
B
 MET 1CYS 166
C
 MET 1PRO 167
D
 MET 1PRO 167
E
 MET 1VAL 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5Y63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed alpha
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
75 86Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
102 109Right-handed alpha
Helix 7
AA7
A
144 161Right-handed alpha
Helix 8
AA8
B
26 30Right-handed alpha
Helix 9
AA9
B
46 57Right-handed alpha
Helix 10
AB1
B
57 64Right-handed alpha
Helix 11
AB2
B
75 86Right-handed alpha
Helix 12
AB3
B
86 91Right-handed alpha
Helix 13
AB4
B
102 108Right-handed alpha
Helix 14
AB5
B
144 161Right-handed alpha
Helix 15
AB6
C
26 30Right-handed alpha
Helix 16
AB7
C
48 57Right-handed alpha
Helix 17
AB8
C
57 64Right-handed alpha
Helix 18
AB9
C
75 86Right-handed alpha
Helix 19
AC1
C
86 91Right-handed alpha
Helix 20
AC2
C
102 109Right-handed alpha
Helix 21
AC3
C
144 161Right-handed alpha
Helix 22
AC4
D
26 30Right-handed alpha
Helix 23
AC5
D
48 57Right-handed alpha
Helix 24
AC6
D
57 64Right-handed alpha
Helix 25
AC7
D
75 86Right-handed alpha
Helix 26
AC8
D
86 91Right-handed alpha
Helix 27
AC9
D
102 108Right-handed alpha
Helix 28
AD1
D
144 161Right-handed alpha
Helix 29
AD2
E
26 30Right-handed alpha
Helix 30
AD3
E
46 57Right-handed alpha
Helix 31
AD4
E
57 64Right-handed alpha
Helix 32
AD5
E
75 84Right-handed alpha
Helix 33
AD6
E
86 91Right-handed alpha
Helix 34
AD7
E
102 108Right-handed alpha
Helix 35
AD8
E
144 161Right-handed alpha
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There are 8 sheets in PDB entry 5Y63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
96 98anti-parallel
Strand 4
A
66 72parallel
Strand 5
A
33 38parallel
Strand 6
A
120 125anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
B
131 137anti-parallel
Strand 9
B
120 125anti-parallel
Strand 10
B
33 38anti-parallel
Strand 11
B
66 72parallel
Strand 12
B
96 98parallel
Strand 13
B
12 16anti-parallel
Strand 14
B
21 25anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
117 118anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
117 118anti-parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 25first strand
Strand 2
C
12 16anti-parallel
Strand 3
C
96 98anti-parallel
Strand 4
C
66 72parallel
Strand 5
C
33 38parallel
Strand 6
C
120 125anti-parallel
Strand 7
C
131 137anti-parallel
Strand 8
D
131 137anti-parallel
Strand 9
D
120 125anti-parallel
Strand 10
D
33 38anti-parallel
Strand 11
D
66 72parallel
Strand 12
D
96 98parallel
Strand 13
D
12 17anti-parallel
Strand 14
D
20 25anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
117 118anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 112first strand
Strand 2
D
117 118anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 25first strand
Strand 2
E
12 16anti-parallel
Strand 3
E
96 98anti-parallel
Strand 4
E
66 72parallel
Strand 5
E
33 38parallel
Strand 6
E
120 125anti-parallel
Strand 7
E
131 137anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 112first strand
Strand 2
E
117 118anti-parallel
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