Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6I entry

There are 2 chains in PDB entry 5Y6I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16THR 264
B
 VAL 16TYR 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5Y6I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
37 46Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
77 89Right-handed alpha
Helix 5
AA5
A
92 109Right-handed alpha
Helix 6
AA6
A
149 159Right-handed alpha
Helix 7
AA7
A
161 172Right-handed alpha
Helix 8
AA8
A
182 197Right-handed alpha
Helix 9
AA9
A
243 259Right-handed alpha
Helix 10
AB1
B
17 32Right-handed alpha
Helix 11
AB2
B
38 46Right-handed alpha
Helix 12
AB3
B
48 62Right-handed alpha
Helix 13
AB4
B
77 90Right-handed alpha
Helix 14
AB5
B
93 109Right-handed alpha
Helix 15
AB6
B
149 159Right-handed alpha
Helix 16
AB7
B
160 172Right-handed alpha
Helix 17
AB8
B
182 197Right-handed alpha
Helix 18
AB9
B
242 260Right-handed alpha
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There are 4 sheets in PDB entry 5Y6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
74 76anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 128first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
223 232anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
199 202anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
73 76anti-parallel
Strand 3
B
65 67anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
121 128anti-parallel
Strand 3
B
111 118anti-parallel
Strand 4
B
223 230anti-parallel
Strand 5
B
213 217anti-parallel
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