Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6J entry

There are 3 chains in PDB entry 5Y6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 258
B
 VAL 4LYS 249
C
 VAL 4ALA 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5Y6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
29 47Right-handed alpha
Helix 3
AA3
A
49 59Right-handed alpha
Helix 4
AA4
A
59 69Right-handed alpha
Helix 5
AA5
A
91 107Right-handed alpha
Helix 6
AA6
A
110 122Right-handed alpha
Helix 7
AA7
A
124 131Right-handed alpha
Helix 8
AA8
A
136 146Right-handed alpha
Helix 9
AA9
A
149 155Right-handed alpha
Helix 10
AB1
A
159 173Right-handed alpha
Helix 11
AB2
A
185 200Right-handed alpha
Helix 12
AB3
A
205 221Right-handed alpha
Helix 13
AB4
A
230 235Right-handed alpha
Helix 14
AB5
A
235 247Right-handed alpha
Helix 15
AB6
B
8 17Right-handed alpha
Helix 16
AB7
B
33 47Right-handed alpha
Helix 17
AB8
B
49 59Right-handed alpha
Helix 18
AB9
B
59 70Right-handed alpha
Helix 19
AC1
B
93 107Right-handed alpha
Helix 20
AC2
B
110 122Right-handed alpha
Helix 21
AC3
B
124 131Right-handed alpha
Helix 22
AC4
B
136 146Right-handed alpha
Helix 23
AC5
B
149 156Right-handed alpha
Helix 24
AC6
B
159 173Right-handed alpha
Helix 25
AC7
B
185 200Right-handed alpha
Helix 26
AC8
B
205 221Right-handed alpha
Helix 27
AC9
B
229 247Right-handed alpha
Helix 28
AD1
C
7 16Right-handed alpha
Helix 29
AD2
C
34 46Right-handed alpha
Helix 30
AD3
C
49 59Right-handed alpha
Helix 31
AD4
C
59 68Right-handed alpha
Helix 32
AD5
C
93 107Right-handed alpha
Helix 33
AD6
C
110 121Right-handed alpha
Helix 34
AD7
C
124 130Right-handed alpha
Helix 35
AD8
C
136 146Right-handed alpha
Helix 36
AD9
C
149 154Right-handed alpha
Helix 37
AE1
C
159 173Right-handed alpha
Helix 38
AE2
C
185 200Right-handed alpha
Helix 39
AE3
C
205 221Right-handed alpha
Helix 40
AE4
C
227 235Right-handed alpha
Helix 41
AE5
C
235 246Right-handed alpha
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There are 3 sheets in PDB entry 5Y6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
77 79anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
77 79anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
77 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il