Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6O entry

There are 9 chains in PDB entry 5Y6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 56LEU 164
B
 LYS 56LEU 164
C
 LYS 57LEU 164
D
 CYS 58SER 165
E
 CYS 58SER 165
F
 CYS 58ASN 163
G
 LYS 57SER 165
H
 LYS 57LEU 164
I
 CYS 58LEU 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5Y6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 78Right-handed alpha
Helix 2
AA2
A
83 95Right-handed alpha
Helix 3
AA3
A
96 101Right-handed alpha
Helix 4
AA4
A
102 119Right-handed alpha
Helix 5
AA5
A
122 136Right-handed alpha
Helix 6
AA6
A
148 163Right-handed alpha
Helix 7
AA7
B
59 78Right-handed alpha
Helix 8
AA8
B
83 94Right-handed alpha
Helix 9
AA9
B
98 101Right-handed 310
Helix 10
AB1
B
102 119Right-handed alpha
Helix 11
AB2
B
122 137Right-handed alpha
Helix 12
AB3
B
147 163Right-handed alpha
Helix 13
AB4
C
59 78Right-handed alpha
Helix 14
AB5
C
79 81Right-handed 310
Helix 15
AB6
C
83 94Right-handed alpha
Helix 16
AB7
C
102 119Right-handed alpha
Helix 17
AB8
C
122 136Right-handed alpha
Helix 18
AB9
C
146 162Right-handed alpha
Helix 19
AC1
D
59 78Right-handed alpha
Helix 20
AC2
D
83 94Right-handed alpha
Helix 21
AC3
D
96 101Right-handed alpha
Helix 22
AC4
D
102 119Right-handed alpha
Helix 23
AC5
D
122 135Right-handed alpha
Helix 24
AC6
D
146 163Right-handed alpha
Helix 25
AC7
E
59 78Right-handed alpha
Helix 26
AC8
E
83 94Right-handed alpha
Helix 27
AC9
E
102 119Right-handed alpha
Helix 28
AD1
E
122 137Right-handed alpha
Helix 29
AD2
E
147 163Right-handed alpha
Helix 30
AD3
F
59 78Right-handed alpha
Helix 31
AD4
F
83 94Right-handed alpha
Helix 32
AD5
F
98 102Right-handed 310
Helix 33
AD6
F
103 119Right-handed alpha
Helix 34
AD7
F
122 137Right-handed alpha
Helix 35
AD8
F
146 162Right-handed alpha
Helix 36
AD9
G
59 72Right-handed alpha
Helix 37
AE1
G
83 94Right-handed alpha
Helix 38
AE2
G
96 102Right-handed alpha
Helix 39
AE3
G
102 119Right-handed alpha
Helix 40
AE4
G
122 137Right-handed alpha
Helix 41
AE5
G
147 163Right-handed alpha
Helix 42
AE6
H
59 78Right-handed alpha
Helix 43
AE7
H
79 81Right-handed 310
Helix 44
AE8
H
83 94Right-handed alpha
Helix 45
AE9
H
98 101Right-handed 310
Helix 46
AF1
H
102 119Right-handed alpha
Helix 47
AF2
H
122 137Right-handed alpha
Helix 48
AF3
H
147 163Right-handed alpha
Helix 49
AF4
I
59 78Right-handed alpha
Helix 50
AF5
I
83 95Right-handed alpha
Helix 51
AF6
I
102 119Right-handed alpha
Helix 52
AF7
I
122 136Right-handed alpha
Helix 53
AF8
I
148 164Right-handed alpha
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There are no sheets in PDB entry 5Y6O
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il