Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6Q entry

There are 3 chains in PDB entry 5Y6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LYS 159
B
 MET 1ALA 330
C
 GLY 28ILE 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5Y6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 33Right-handed alpha
Helix 2
AA2
A
63 65Right-handed 310
Helix 3
AA3
A
66 71Right-handed 310
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
89 98Right-handed alpha
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
125 133Right-handed alpha
Helix 8
AA8
A
142 158Right-handed alpha
Helix 9
AA9
B
11 20Right-handed alpha
Helix 10
AB1
B
32 39Right-handed alpha
Helix 11
AB2
B
53 57Right-handed 310
Helix 12
AB3
B
73 80Right-handed alpha
Helix 13
AB4
B
82 87Right-handed alpha
Helix 14
AB5
B
87 96Right-handed alpha
Helix 15
AB6
B
99 106Right-handed alpha
Helix 16
AB7
B
107 113Right-handed alpha
Helix 17
AB8
B
165 173Right-handed alpha
Helix 18
AB9
B
191 195Right-handed alpha
Helix 19
AC1
B
222 227Right-handed alpha
Helix 20
AC2
B
274 282Right-handed alpha
Helix 21
AC3
B
287 296Right-handed alpha
Helix 22
AC4
B
297 301Right-handed 310
Helix 23
AC5
B
308 327Right-handed alpha
Helix 24
AC6
C
42 48Right-handed alpha
Helix 25
AC7
C
53 57Right-handed 310
Helix 26
AC8
C
82 87Right-handed alpha
Helix 27
AC9
C
108 112Right-handed 310
Helix 28
AD1
C
141 150Right-handed alpha
Helix 29
AD2
C
184 191Right-handed alpha
Helix 30
AD3
C
232 245Right-handed alpha
Helix 31
AD4
C
247 249Right-handed 310
Helix 32
AD5
C
269 283Right-handed alpha
Helix 33
AD6
C
292 297Right-handed 310
Helix 34
AD7
C
374 394Right-handed alpha
Helix 35
AD8
C
396 404Right-handed alpha
Helix 36
AD9
C
420 433Right-handed alpha
Helix 37
AE1
C
434 437Right-handed 310
Helix 38
AE2
C
491 505Right-handed alpha
Helix 39
AE3
C
507 511Right-handed 310
Helix 40
AE4
C
530 557Right-handed alpha
Helix 41
AE5
C
566 568Right-handed 310
Helix 42
AE6
C
587 594Right-handed alpha
Helix 43
AE7
C
595 598Right-handed 310
Helix 44
AE8
C
611 620Right-handed alpha
Helix 45
AE9
C
668 689Right-handed alpha
Helix 46
AF1
C
713 717Right-handed 310
Helix 47
AF2
C
742 746Right-handed 310
Helix 48
AF3
C
747 761Right-handed alpha
Helix 49
AF4
C
770 774Right-handed 310
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There are 10 sheets in PDB entry 5Y6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 20first strand
Strand 2
A
5 11anti-parallel
Strand 3
A
74 76parallel
Strand 4
A
52 55anti-parallel
Strand 5
A
58 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
46 49parallel
Strand 3
B
25 27parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
65 69anti-parallel
Strand 3
B
213 220anti-parallel
Strand 4
B
176 180anti-parallel
Strand 5
B
186 190anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 233first strand
Strand 2
B
244 252anti-parallel
Strand 3
B
257 265anti-parallel
Strand 4
B
272 273anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 95first strand
Strand 2
C
133 139anti-parallel
Strand 3
C
63 69anti-parallel
Strand 4
C
286 289parallel
Strand 5
C
214 220anti-parallel
Strand 6
C
223 227anti-parallel
Strand 7
C
251 254parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
75 81anti-parallel
Strand 3
C
153 158anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 182first strand
Strand 2
C
353 361anti-parallel
Strand 3
C
319 330parallel
Strand 4
C
305 313anti-parallel
Strand 5
C
194 202anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
445 446first strand
Strand 2
C
449 461anti-parallel
Strand 3
C
634 646anti-parallel
Strand 4
C
652 662anti-parallel
Strand 5
C
720 724parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
512 514first strand
Strand 2
C
479 482parallel
Strand 3
C
468 473anti-parallel
Strand 4
C
600 604anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
570 573first strand
Strand 2
C
576 579anti-parallel
Strand 3
C
584 586anti-parallel
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