Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6T entry

There is 1 chain in PDB entry 5Y6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17GLN 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5Y6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 58Right-handed alpha
Helix 2
AA2
A
59 73Right-handed alpha
Helix 3
AA3
A
106 121Right-handed alpha
Helix 4
AA4
A
137 146Right-handed alpha
Helix 5
AA5
A
146 157Right-handed alpha
Helix 6
AA6
A
157 165Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
212 231Right-handed alpha
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
257 266Right-handed alpha
Helix 13
AB4
A
295 300Right-handed 310
Helix 14
AB5
A
319 330Right-handed alpha
Helix 15
AB6
A
349 361Right-handed alpha
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There are 4 sheets in PDB entry 5Y6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
26 29anti-parallel
Strand 3
A
32 33anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
77 84parallel
Strand 3
A
124 131parallel
Strand 4
A
171 178parallel
Strand 5
A
235 240parallel
Strand 6
A
274 278parallel
Strand 7
A
305 309parallel
Strand 8
A
334 337parallel
Strand 9
A
36 40parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
98 100anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
370 371anti-parallel
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