Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6Z entry

There are 6 chains in PDB entry 5Y6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PHE 462
B
 C 597 A 611
C
 U 690 A 701
E
 GLY 1PHE 462
F
 G 582 A 613
G
 U 690 A 701
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 5Y6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed alpha
Helix 2
AA2
A
53 60Right-handed alpha
Helix 3
AA3
A
71 86Right-handed alpha
Helix 4
AA4
A
87 89Right-handed 310
Helix 5
AA5
A
96 103Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
165 170Right-handed alpha
Helix 10
AB1
A
180 201Right-handed alpha
Helix 11
AB2
A
213 225Right-handed alpha
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
242 256Right-handed alpha
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
266 270Right-handed alpha
Helix 16
AB7
A
293 314Right-handed alpha
Helix 17
AB8
A
318 322Right-handed 310
Helix 18
AB9
A
340 350Right-handed alpha
Helix 19
AC1
A
394 403Right-handed alpha
Helix 20
AC2
A
407 409Right-handed 310
Helix 21
AC3
A
410 423Right-handed alpha
Helix 22
AC4
A
426 438Right-handed alpha
Helix 23
AC5
A
440 445Right-handed alpha
Helix 24
AC6
A
450 461Right-handed alpha
Helix 25
AC7
E
9 13Right-handed alpha
Helix 26
AC8
E
53 60Right-handed alpha
Helix 27
AC9
E
71 86Right-handed alpha
Helix 28
AD1
E
87 89Right-handed 310
Helix 29
AD2
E
96 103Right-handed alpha
Helix 30
AD3
E
126 130Right-handed 310
Helix 31
AD4
E
138 149Right-handed alpha
Helix 32
AD5
E
165 170Right-handed alpha
Helix 33
AD6
E
180 200Right-handed alpha
Helix 34
AD7
E
213 225Right-handed alpha
Helix 35
AD8
E
236 241Right-handed alpha
Helix 36
AD9
E
242 256Right-handed alpha
Helix 37
AE1
E
259 270Right-handed alpha
Helix 38
AE2
E
293 314Right-handed alpha
Helix 39
AE3
E
318 322Right-handed 310
Helix 40
AE4
E
340 351Right-handed alpha
Helix 41
AE5
E
394 403Right-handed alpha
Helix 42
AE6
E
407 409Right-handed 310
Helix 43
AE7
E
410 423Right-handed alpha
Helix 44
AE8
E
426 438Right-handed alpha
Helix 45
AE9
E
440 445Right-handed alpha
Helix 46
AF1
E
450 461Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5Y6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
271 276anti-parallel
Strand 4
A
154 158parallel
Strand 5
A
175 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
404 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
162 163anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
330 335anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
A
389 392anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 8first strand
Strand 2
E
279 284anti-parallel
Strand 3
E
271 276anti-parallel
Strand 4
E
154 158parallel
Strand 5
E
175 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 27first strand
Strand 2
E
404 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 40first strand
Strand 2
E
162 163anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
323 327first strand
Strand 2
E
330 335anti-parallel
Strand 3
E
228 234anti-parallel
Strand 4
E
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
378 381first strand
Strand 2
E
389 392anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il