Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y79 entry

There are 2 chains in PDB entry 5Y79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 100PRO 404
B
 SER 100PRO 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5Y79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 134Right-handed alpha
Helix 2
AA2
A
136 158Right-handed alpha
Helix 3
AA3
A
167 173Right-handed alpha
Helix 4
AA4
A
174 195Right-handed alpha
Helix 5
AA5
A
196 205Right-handed alpha
Helix 6
AA6
A
206 220Right-handed alpha
Helix 7
AA7
A
225 245Right-handed alpha
Helix 8
AA8
A
249 277Right-handed alpha
Helix 9
AA9
A
284 309Right-handed alpha
Helix 10
AB1
A
321 350Right-handed alpha
Helix 11
AB2
A
351 375Right-handed alpha
Helix 12
AB3
A
379 403Right-handed alpha
Helix 13
AB4
B
101 134Right-handed alpha
Helix 14
AB5
B
136 158Right-handed alpha
Helix 15
AB6
B
167 174Right-handed alpha
Helix 16
AB7
B
174 195Right-handed alpha
Helix 17
AB8
B
196 205Right-handed alpha
Helix 18
AB9
B
206 220Right-handed alpha
Helix 19
AC1
B
225 245Right-handed alpha
Helix 20
AC2
B
249 277Right-handed alpha
Helix 21
AC3
B
284 309Right-handed alpha
Helix 22
AC4
B
321 350Right-handed alpha
Helix 23
AC5
B
351 375Right-handed alpha
Helix 24
AC6
B
379 403Right-handed alpha
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There are no sheets in PDB entry 5Y79
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il