Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y7F entry

There is 1 chain in PDB entry 5Y7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1190ARG 1462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5Y7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1200 1217Right-handed alpha
Helix 2
AA2
A
1229 1231Right-handed 310
Helix 3
AA3
A
1232 1247Right-handed alpha
Helix 4
AA4
A
1266 1277Right-handed alpha
Helix 5
AA5
A
1303 1309Right-handed alpha
Helix 6
AA6
A
1325 1335Right-handed 310
Helix 7
AA7
A
1336 1344Right-handed alpha
Helix 8
AA8
A
1358 1364Right-handed alpha
Helix 9
AA9
A
1365 1377Right-handed alpha
Helix 10
AB1
A
1386 1395Right-handed alpha
Helix 11
AB2
A
1405 1409Right-handed 310
Helix 12
AB3
A
1416 1423Right-handed 310
Helix 13
AB4
A
1437 1446Right-handed alpha
Helix 14
AB5
A
1447 1462Right-handed alpha
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There are 2 sheets in PDB entry 5Y7F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1249 1253first strand
Strand 2
A
1222 1227parallel
Strand 3
A
1192 1195parallel
Strand 4
A
1289 1293parallel
Strand 5
A
1349 1357anti-parallel
Strand 6
A
1316 1320anti-parallel
Strand 7
A
1401 1403parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1297 1299first strand
Strand 2
A
1425 1427anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il