Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y7O entry

There are 2 chains in PDB entry 5Y7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 29	GLY 1042
B	ASP 29	ASP 443

There are 66 helices in PDB entry 5Y7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	60	69	Right-handed alpha
Helix 3	AA3	A	78	91	Right-handed alpha
Helix 4	AA4	A	100	111	Right-handed alpha
Helix 5	AA5	A	114	128	Right-handed alpha
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	199	204	Right-handed alpha
Helix 8	AA8	A	291	306	Right-handed alpha
Helix 9	AA9	A	308	319	Right-handed alpha
Helix 10	AB1	A	319	328	Right-handed alpha
Helix 11	AB2	A	368	385	Right-handed alpha
Helix 12	AB3	A	386	390	Right-handed 310
Helix 13	AB4	A	420	424	Right-handed 310
Helix 14	AB5	A	478	487	Right-handed alpha
Helix 15	AB6	A	487	495	Right-handed alpha
Helix 16	AB7	A	509	523	Right-handed alpha
Helix 17	AB8	A	526	531	Right-handed alpha
Helix 18	AB9	A	531	540	Right-handed alpha
Helix 19	AC1	A	548	557	Right-handed alpha
Helix 20	AC2	A	574	579	Right-handed alpha
Helix 21	AC3	A	581	593	Right-handed alpha
Helix 22	AC4	A	614	635	Right-handed alpha
Helix 23	AC5	A	643	650	Right-handed alpha
Helix 24	AC6	A	710	725	Right-handed alpha
Helix 25	AC7	A	746	751	Right-handed 310
Helix 26	AC8	A	761	771	Right-handed alpha
Helix 27	AC9	A	786	791	Right-handed alpha
Helix 28	AD1	A	791	796	Right-handed alpha
Helix 29	AD2	A	823	836	Right-handed alpha
Helix 30	AD3	A	839	845	Right-handed alpha
Helix 31	AD4	A	857	869	Right-handed alpha
Helix 32	AD5	A	924	937	Right-handed alpha
Helix 33	AD6	B	44	57	Right-handed alpha
Helix 34	AD7	B	60	70	Right-handed alpha
Helix 35	AD8	B	78	91	Right-handed alpha
Helix 36	AD9	B	98	111	Right-handed alpha
Helix 37	AE1	B	114	128	Right-handed alpha
Helix 38	AE2	B	129	133	Right-handed 310
Helix 39	AE3	B	195	197	Right-handed 310
Helix 40	AE4	B	198	207	Right-handed alpha
Helix 41	AE5	B	291	306	Right-handed alpha
Helix 42	AE6	B	308	319	Right-handed alpha
Helix 43	AE7	B	319	328	Right-handed alpha
Helix 44	AE8	B	334	340	Right-handed alpha
Helix 45	AE9	B	368	389	Right-handed alpha
Helix 46	AF1	B	392	398	Right-handed alpha
Helix 47	AF2	B	420	425	Right-handed 310
Helix 48	AF3	B	478	488	Right-handed alpha
Helix 49	AF4	B	488	495	Right-handed alpha
Helix 50	AF5	B	509	526	Right-handed alpha
Helix 51	AF6	B	529	540	Right-handed alpha
Helix 52	AF7	B	548	559	Right-handed alpha
Helix 53	AF8	B	574	579	Right-handed alpha
Helix 54	AF9	B	581	592	Right-handed alpha
Helix 55	AG1	B	614	635	Right-handed alpha
Helix 56	AG2	B	644	649	Right-handed alpha
Helix 57	AG3	B	711	725	Right-handed alpha
Helix 58	AG4	B	761	767	Right-handed alpha
Helix 59	AG5	B	767	772	Right-handed alpha
Helix 60	AG6	B	789	794	Right-handed alpha
Helix 61	AG7	B	795	798	Right-handed 310
Helix 62	AG8	B	823	836	Right-handed alpha
Helix 63	AG9	B	838	847	Right-handed alpha
Helix 64	AH1	B	860	869	Right-handed alpha
Helix 65	AH2	B	924	937	Right-handed alpha
Helix 66	AH3	B	1021	1023	Right-handed 310

There are 14 sheets in PDB entry 5Y7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	984	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	1029	1035	parallel
Strand 4	A	1006	1008	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	215	220	parallel
Strand 4	A	178	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	960	965	first strand
Strand 2	A	236	242	anti-parallel
Strand 3	A	994	999	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	355	357	anti-parallel
Strand 3	A	913	917	anti-parallel
Strand 4	A	942	946	parallel
Strand 5	A	902	903	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	500	505	anti-parallel
Strand 3	A	469	474	parallel
Strand 4	A	601	603	anti-parallel
Strand 5	A	606	608	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	669	670	first strand
Strand 2	A	811	812	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	734	first strand
Strand 2	A	700	704	parallel
Strand 3	A	806	808	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	983	984	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	1030	1038	parallel
Strand 4	B	1004	1008	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	215	220	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	960	965	first strand
Strand 2	B	236	244	anti-parallel
Strand 3	B	993	999	anti-parallel
Strand 4	B	1018	1019	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	361	first strand
Strand 2	B	355	357	anti-parallel
Strand 3	B	913	918	anti-parallel
Strand 4	B	942	947	parallel
Strand 5	B	901	903	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	499	505	anti-parallel
Strand 3	B	468	474	parallel
Strand 4	B	601	603	anti-parallel
Strand 5	B	606	608	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	734	first strand
Strand 2	B	700	704	parallel
Strand 3	B	805	808	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7O