Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y7Q entry

There are 4 chains in PDB entry 5Y7Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14ASP 559
D
 G 1 G 10
B
 C 8 A 14
C
 G 1 T 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5Y7Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 37Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
56 69Right-handed alpha
Helix 4
AA4
A
77 80Right-handed 310
Helix 5
AA5
A
86 97Right-handed alpha
Helix 6
AA6
A
107 115Right-handed alpha
Helix 7
AA7
A
116 124Right-handed alpha
Helix 8
AA8
A
125 128Right-handed 310
Helix 9
AA9
A
134 143Right-handed alpha
Helix 10
AB1
A
152 156Right-handed alpha
Helix 11
AB2
A
168 181Right-handed alpha
Helix 12
AB3
A
187 195Right-handed alpha
Helix 13
AB4
A
214 233Right-handed alpha
Helix 14
AB5
A
236 244Right-handed alpha
Helix 15
AB6
A
251 272Right-handed alpha
Helix 16
AB7
A
274 284Right-handed alpha
Helix 17
AB8
A
289 301Right-handed alpha
Helix 18
AB9
A
303 317Right-handed alpha
Helix 19
AC1
A
320 338Right-handed alpha
Helix 20
AC2
A
366 376Right-handed alpha
Helix 21
AC3
A
387 398Right-handed alpha
Helix 22
AC4
A
398 403Right-handed alpha
Helix 23
AC5
A
418 423Right-handed 310
Helix 24
AC6
A
425 430Right-handed alpha
Helix 25
AC7
A
430 440Right-handed alpha
Helix 26
AC8
A
445 458Right-handed alpha
Helix 27
AC9
A
471 482Right-handed alpha
Helix 28
AD1
A
483 497Right-handed alpha
Helix 29
AD2
A
497 502Right-handed alpha
Helix 30
AD3
A
531 544Right-handed alpha
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There are 3 sheets in PDB entry 5Y7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
163 166anti-parallel
Strand 3
A
100 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 359first strand
Strand 2
A
548 556parallel
Strand 3
A
517 524parallel
Strand 4
A
508 512anti-parallel
Strand 5
A
381 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il