Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y7W entry

There are 8 chains in PDB entry 5Y7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 241ASP 365
B
 GLU 260GLU 367
C
 LEU 1LEU 9
C
 LYS 11LEU 12
C
 TYR 15TYR 15
D
 LEU 1LEU 9
D
 LYS 11LEU 12
D
 TYR 15TYR 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5Y7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
241 254Right-handed alpha
Helix 2
AA2
A
277 283Right-handed alpha
Helix 3
AA3
A
287 301Right-handed alpha
Helix 4
AA4
A
308 321Right-handed alpha
Helix 5
AA5
B
277 282Right-handed alpha
Helix 6
AA6
B
287 300Right-handed alpha
Helix 7
AA7
B
308 321Right-handed alpha
Helix 8
AA8
C
5 15Right-handed alpha
Helix 9
AA9
D
5 15Right-handed alpha
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There are 4 sheets in PDB entry 5Y7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
357 364anti-parallel
Strand 4
A
337 347anti-parallel
Strand 5
A
322 324anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
357 364anti-parallel
Strand 4
A
337 347anti-parallel
Strand 5
A
328 331anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 276first strand
Strand 2
B
261 266anti-parallel
Strand 3
B
357 365anti-parallel
Strand 4
B
337 347anti-parallel
Strand 5
B
322 324anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 276first strand
Strand 2
B
261 266anti-parallel
Strand 3
B
357 365anti-parallel
Strand 4
B
337 347anti-parallel
Strand 5
B
328 331anti-parallel
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