Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y7Z entry

There are 4 chains in PDB entry 5Y7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	ASN 335
B	SER 24	ASN 335
D	GLN 1	ALA 124
C	GLN 1	SER 122

There are 33 helices in PDB entry 5Y7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	92	Right-handed alpha
Helix 2	AA2	A	130	136	Right-handed alpha
Helix 3	AA3	A	137	141	Right-handed 310
Helix 4	AA4	A	144	165	Right-handed alpha
Helix 5	AA5	A	175	177	Right-handed 310
Helix 6	AA6	A	207	221	Right-handed alpha
Helix 7	AA7	A	222	227	Right-handed 310
Helix 8	AA8	A	228	233	Right-handed alpha
Helix 9	AA9	A	243	258	Right-handed alpha
Helix 10	AB1	A	267	273	Right-handed alpha
Helix 11	AB2	A	285	287	Right-handed 310
Helix 12	AB3	A	288	296	Right-handed alpha
Helix 13	AB4	A	305	320	Right-handed alpha
Helix 14	AB5	A	328	333	Right-handed alpha
Helix 15	AB6	B	75	92	Right-handed alpha
Helix 16	AB7	B	130	136	Right-handed alpha
Helix 17	AB8	B	144	164	Right-handed alpha
Helix 18	AB9	B	175	177	Right-handed 310
Helix 19	AC1	B	207	220	Right-handed alpha
Helix 20	AC2	B	221	222	Right-handed 310
Helix 21	AC3	B	223	227	Right-handed 310
Helix 22	AC4	B	228	232	Right-handed 310
Helix 23	AC5	B	243	259	Right-handed alpha
Helix 24	AC6	B	267	273	Right-handed alpha
Helix 25	AC7	B	285	287	Right-handed 310
Helix 26	AC8	B	288	296	Right-handed alpha
Helix 27	AC9	B	299	303	Right-handed 310
Helix 28	AD1	B	305	320	Right-handed alpha
Helix 29	AD2	B	328	333	Right-handed alpha
Helix 30	AD3	D	28	32	Right-handed 310
Helix 31	AD4	D	87	91	Right-handed 310
Helix 32	AD5	C	28	32	Right-handed 310
Helix 33	AD6	C	87	91	Right-handed 310

There are 10 sheets in PDB entry 5Y7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	38	47	anti-parallel
Strand 3	A	52	59	anti-parallel
Strand 4	A	65	72	anti-parallel
Strand 5	A	118	124	anti-parallel
Strand 6	A	101	107	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	179	181	anti-parallel
Strand 3	A	187	189	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	39	47	anti-parallel
Strand 3	B	52	59	anti-parallel
Strand 4	B	65	72	anti-parallel
Strand 5	B	118	124	anti-parallel
Strand 6	B	101	107	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	179	181	anti-parallel
Strand 3	B	187	189	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	69	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	106	107	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	44	51	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	92	98	anti-parallel
Strand 5	C	116	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7Z