Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y82 entry

There are 4 chains in PDB entry 5Y82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 24	GLY 222
A	ILE 24	GLY 222
B	ILE 24	GLY 222
C	ILE 24	GLY 222

There are 12 helices in PDB entry 5Y82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	146	148	Right-handed 310
Helix 2	AA2	D	198	206	Right-handed alpha
Helix 3	AA3	D	209	218	Right-handed alpha
Helix 4	AA4	A	146	148	Right-handed 310
Helix 5	AA5	A	198	206	Right-handed alpha
Helix 6	AA6	A	209	218	Right-handed alpha
Helix 7	AA7	B	146	148	Right-handed 310
Helix 8	AA8	B	198	206	Right-handed alpha
Helix 9	AA9	B	209	218	Right-handed alpha
Helix 10	AB1	C	146	148	Right-handed 310
Helix 11	AB2	C	198	206	Right-handed alpha
Helix 12	AB3	C	209	218	Right-handed alpha

There are 12 sheets in PDB entry 5Y82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	28	first strand
Strand 2	D	33	36	anti-parallel
Strand 3	D	40	44	anti-parallel
Strand 4	D	51	56	anti-parallel
Strand 5	D	62	66	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	125	139	anti-parallel
Strand 3	D	112	119	anti-parallel
Strand 4	D	102	108	anti-parallel
Strand 5	D	88	90	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	125	139	anti-parallel
Strand 3	D	181	196	anti-parallel
Strand 4	D	166	171	anti-parallel
Strand 5	D	156	161	anti-parallel
Strand 6	D	150	153	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	32	36	anti-parallel
Strand 3	A	40	45	anti-parallel
Strand 4	A	51	56	anti-parallel
Strand 5	A	62	66	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	181	184	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	102	108	anti-parallel
Strand 3	A	112	119	anti-parallel
Strand 4	A	125	132	anti-parallel
Strand 5	A	187	196	anti-parallel
Strand 6	A	166	171	anti-parallel
Strand 7	A	156	161	anti-parallel
Strand 8	A	150	153	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	28	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	40	45	anti-parallel
Strand 4	B	51	56	anti-parallel
Strand 5	B	62	66	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	125	139	anti-parallel
Strand 3	B	112	119	anti-parallel
Strand 4	B	99	108	anti-parallel
Strand 5	B	88	94	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	125	139	anti-parallel
Strand 3	B	181	196	anti-parallel
Strand 4	B	166	171	anti-parallel
Strand 5	B	156	161	anti-parallel
Strand 6	B	150	153	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	45	anti-parallel
Strand 4	C	51	56	anti-parallel
Strand 5	C	62	66	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	136	139	anti-parallel
Strand 3	C	181	184	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	102	108	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	125	132	anti-parallel
Strand 5	C	187	196	anti-parallel
Strand 6	C	166	171	anti-parallel
Strand 7	C	156	161	anti-parallel
Strand 8	C	150	153	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y82

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y82