Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y86 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5Y86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 138SER 349
A
 THR 351THR 368
A
 ILE 370ASN 444
A
 LYS 446LEU 511
A
 PRO 513THR 532
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5Y86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
142 150Right-handed alpha
Helix 2
AA2
A
155 162Right-handed alpha
Helix 3
AA3
A
163 165Right-handed 310
Helix 4
AA4
A
184 189Right-handed alpha
Helix 5
AA5
A
243 264Right-handed alpha
Helix 6
AA6
A
294 302Right-handed alpha
Helix 7
AA7
A
308 329Right-handed alpha
Helix 8
AA8
A
337 339Right-handed 310
Helix 9
AA9
A
355 359Right-handed 310
Helix 10
AB1
A
372 376Right-handed 310
Helix 11
AB2
A
377 383Right-handed alpha
Helix 12
AB3
A
388 405Right-handed alpha
Helix 13
AB4
A
413 426Right-handed alpha
Helix 14
AB5
A
429 435Right-handed alpha
Helix 15
AB6
A
438 442Right-handed 310
Helix 16
AB7
A
482 487Right-handed alpha
Helix 17
AB8
A
492 503Right-handed alpha
Helix 18
AB9
A
506 510Right-handed 310
Helix 19
AC1
A
512 519Right-handed alpha
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There are 5 sheets in PDB entry 5Y86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
209 218anti-parallel
Strand 3
A
221 228anti-parallel
Strand 4
A
233 240anti-parallel
Strand 5
A
283 288anti-parallel
Strand 6
A
274 280anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
360 361anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
351 353anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
462 465anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
474 475anti-parallel
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