Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y8A entry

There are 2 chains in PDB entry 5Y8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 38ALA 305
B
 GLY 38ALA 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5Y8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 57Right-handed alpha
Helix 2
AA2
A
76 81Right-handed alpha
Helix 3
AA3
A
92 99Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
134 149Right-handed alpha
Helix 6
AA6
A
151 176Right-handed alpha
Helix 7
AA7
A
204 213Right-handed alpha
Helix 8
AA8
A
229 237Right-handed alpha
Helix 9
AA9
A
246 252Right-handed 310
Helix 10
AB1
A
253 259Right-handed alpha
Helix 11
AB2
A
266 272Right-handed alpha
Helix 12
AB3
A
278 284Right-handed alpha
Helix 13
AB4
A
288 304Right-handed alpha
Helix 14
AB5
B
46 57Right-handed alpha
Helix 15
AB6
B
76 81Right-handed alpha
Helix 16
AB7
B
92 98Right-handed alpha
Helix 17
AB8
B
112 122Right-handed alpha
Helix 18
AB9
B
134 150Right-handed alpha
Helix 19
AC1
B
151 176Right-handed alpha
Helix 20
AC2
B
204 213Right-handed alpha
Helix 21
AC3
B
229 237Right-handed alpha
Helix 22
AC4
B
246 249Right-handed 310
Helix 23
AC5
B
253 259Right-handed alpha
Helix 24
AC6
B
262 265Right-handed 310
Helix 25
AC7
B
266 272Right-handed alpha
Helix 26
AC8
B
278 284Right-handed alpha
Helix 27
AC9
B
288 304Right-handed alpha
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There are 6 sheets in PDB entry 5Y8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
40 45parallel
Strand 3
A
103 107parallel
Strand 4
A
125 129parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
185 192parallel
Strand 3
A
197 200anti-parallel
Strand 4
A
225 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
185 192parallel
Strand 3
A
240 244parallel
Strand 4
A
274 277parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
40 45parallel
Strand 3
B
103 106parallel
Strand 4
B
125 128parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
185 190parallel
Strand 3
B
198 200anti-parallel
Strand 4
B
225 226anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
185 190parallel
Strand 3
B
240 244parallel
Strand 4
B
274 277parallel
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