Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y8B entry

There is 1 chain in PDB entry 5Y8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 94GLN 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5Y8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 112Right-handed alpha
Helix 2
AA2
A
114 116Right-handed 310
Helix 3
AA3
A
128 133Right-handed alpha
Helix 4
AA4
A
145 151Right-handed alpha
Helix 5
AA5
A
165 175Right-handed alpha
Helix 6
AA6
A
189 202Right-handed alpha
Helix 7
AA7
A
204 226Right-handed alpha
Helix 8
AA8
A
227 229Right-handed 310
Helix 9
AA9
A
253 262Right-handed alpha
Helix 10
AB1
A
267 271Right-handed alpha
Helix 11
AB2
A
280 288Right-handed alpha
Helix 12
AB3
A
296 302Right-handed alpha
Helix 13
AB4
A
303 309Right-handed alpha
Helix 14
AB5
A
317 322Right-handed alpha
Helix 15
AB6
A
329 335Right-handed alpha
Helix 16
AB7
A
339 356Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5Y8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
98 100parallel
Strand 3
A
156 160parallel
Strand 4
A
179 182parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
234 241parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
276 278anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
234 241parallel
Strand 3
A
291 295parallel
Strand 4
A
325 328parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il