Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y8N entry

There are 2 chains in PDB entry 5Y8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 291
B
 MET 0ALA 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5Y8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
33 43Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
67 79Right-handed alpha
Helix 5
AA5
A
95 109Right-handed alpha
Helix 6
AA6
A
120 128Right-handed alpha
Helix 7
AA7
A
137 149Right-handed alpha
Helix 8
AA8
A
162 192Right-handed alpha
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
210 215Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
237 256Right-handed alpha
Helix 13
AB4
A
259 277Right-handed alpha
Helix 14
AB5
A
280 291Right-handed 310
Helix 15
AB6
B
12 23Right-handed alpha
Helix 16
AB7
B
33 43Right-handed alpha
Helix 17
AB8
B
50 57Right-handed alpha
Helix 18
AB9
B
67 79Right-handed alpha
Helix 19
AC1
B
95 109Right-handed alpha
Helix 20
AC2
B
120 127Right-handed alpha
Helix 21
AC3
B
137 149Right-handed alpha
Helix 22
AC4
B
162 193Right-handed alpha
Helix 23
AC5
B
195 205Right-handed alpha
Helix 24
AC6
B
210 215Right-handed alpha
Helix 25
AC7
B
226 231Right-handed 310
Helix 26
AC8
B
237 256Right-handed alpha
Helix 27
AC9
B
259 277Right-handed alpha
Helix 28
AD1
B
280 289Right-handed 310
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There are 4 sheets in PDB entry 5Y8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
26 30parallel
Strand 3
A
3 7parallel
Strand 4
A
60 63parallel
Strand 5
A
87 90parallel
Strand 6
A
112 115parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
152 159parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
26 30parallel
Strand 3
B
3 7parallel
Strand 4
B
60 63parallel
Strand 5
B
87 90parallel
Strand 6
B
112 115parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
152 159parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il