Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y8T entry

There are 3 chains in PDB entry 5Y8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ASP 180
B
 ARG 2GLU 181
C
 ARG 2ASP 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5Y8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
13 15Right-handed 310
Helix 3
AA3
A
18 28Right-handed alpha
Helix 4
AA4
A
29 34Right-handed alpha
Helix 5
AA5
A
37 51Right-handed alpha
Helix 6
AA6
A
73 86Right-handed alpha
Helix 7
AA7
A
96 104Right-handed alpha
Helix 8
AA8
A
105 108Right-handed 310
Helix 9
AA9
A
109 140Right-handed alpha
Helix 10
AB1
A
151 180Right-handed alpha
Helix 11
AB2
B
4 12Right-handed alpha
Helix 12
AB3
B
13 15Right-handed 310
Helix 13
AB4
B
19 27Right-handed alpha
Helix 14
AB5
B
29 34Right-handed alpha
Helix 15
AB6
B
37 39Right-handed 310
Helix 16
AB7
B
40 51Right-handed alpha
Helix 17
AB8
B
73 86Right-handed alpha
Helix 18
AB9
B
96 104Right-handed alpha
Helix 19
AC1
B
105 108Right-handed 310
Helix 20
AC2
B
109 140Right-handed alpha
Helix 21
AC3
B
151 181Right-handed alpha
Helix 22
AC4
C
4 12Right-handed alpha
Helix 23
AC5
C
19 30Right-handed alpha
Helix 24
AC6
C
37 51Right-handed alpha
Helix 25
AC7
C
73 86Right-handed alpha
Helix 26
AC8
C
96 104Right-handed alpha
Helix 27
AC9
C
105 108Right-handed 310
Helix 28
AD1
C
109 140Right-handed alpha
Helix 29
AD2
C
151 180Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5Y8T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
69 72anti-parallel
Strand 3
B
54 57anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
69 72anti-parallel
Strand 3
C
54 56anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il