Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Y8V entry

There are 4 chains in PDB entry 5Y8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 21	LEU 154
A	ILE 21	LEU 154
C	ILE 21	LEU 154
D	ILE 21	LEU 154

There are 6 helices in PDB entry 5Y8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	58	61	Right-handed 310
Helix 2	AA2	B	123	128	Right-handed alpha
Helix 3	AA3	A	58	61	Right-handed 310
Helix 4	AA4	A	123	130	Right-handed alpha
Helix 5	AA5	C	58	61	Right-handed 310
Helix 6	AA6	D	58	61	Right-handed 310

There are 8 sheets in PDB entry 5Y8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	92	first strand
Strand 2	B	45	53	anti-parallel
Strand 3	B	22	33	anti-parallel
Strand 4	B	133	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	63	69	anti-parallel
Strand 3	B	97	104	anti-parallel
Strand 4	B	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	92	first strand
Strand 2	A	45	53	anti-parallel
Strand 3	A	22	33	anti-parallel
Strand 4	A	133	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	97	104	anti-parallel
Strand 4	A	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	92	first strand
Strand 2	C	45	53	anti-parallel
Strand 3	C	22	33	anti-parallel
Strand 4	C	133	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	112	117	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	92	first strand
Strand 2	D	45	53	anti-parallel
Strand 3	D	22	33	anti-parallel
Strand 4	D	133	143	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	63	69	anti-parallel
Strand 3	D	96	104	anti-parallel
Strand 4	D	112	118	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Y8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8V