Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y8X entry

There are 2 chains in PDB entry 5Y8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35THR 395
B
 THR 399ASN 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5Y8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 62Right-handed alpha
Helix 2
AA2
A
65 81Right-handed alpha
Helix 3
AA3
A
130 135Right-handed alpha
Helix 4
AA4
A
136 141Right-handed 310
Helix 5
AA5
A
145 158Right-handed alpha
Helix 6
AA6
A
161 176Right-handed alpha
Helix 7
AA7
A
180 190Right-handed alpha
Helix 8
AA8
A
190 196Right-handed alpha
Helix 9
AA9
A
199 204Right-handed alpha
Helix 10
AB1
A
205 208Right-handed 310
Helix 11
AB2
A
218 232Right-handed alpha
Helix 12
AB3
A
233 238Right-handed alpha
Helix 13
AB4
A
239 252Right-handed alpha
Helix 14
AB5
A
257 264Right-handed alpha
Helix 15
AB6
A
289 303Right-handed alpha
Helix 16
AB7
A
304 309Right-handed 310
Helix 17
AB8
A
313 335Right-handed alpha
Helix 18
AB9
A
344 350Right-handed alpha
Helix 19
AC1
A
350 359Right-handed alpha
Helix 20
AC2
A
374 379Right-handed 310
Helix 21
AC3
B
437 442Right-handed 310
Helix 22
AC4
B
481 483Right-handed 310
Helix 23
AC5
B
484 498Right-handed alpha
Helix 24
AC6
B
502 509Right-handed alpha
Helix 25
AC7
B
527 538Right-handed alpha
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There are 5 sheets in PDB entry 5Y8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
B
562 567anti-parallel
Strand 3
B
552 557anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
90 96anti-parallel
Strand 4
B
411 417anti-parallel
Strand 5
B
400 405anti-parallel
Strand 6
A
43 47anti-parallel
Strand 7
B
574 578anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
215 216anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
279 283anti-parallel
Strand 3
B
465 469anti-parallel
Strand 4
B
472 477anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 516first strand
Strand 2
B
519 522anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il